Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing

Nop17 is a key R2TP factor for the assembly and maturation of box C/D snoRNP complex

(2015) Marcela B Prieto et al.   BMC MOLECULAR BIOLOGY

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer

(2015) Zurab Siprashvili et al.   NATURE GENETICS

The emerging landscape of small nucleolar RNAs in cell biology

(2015) Fabien Dupuis-Sandoval et al.   Wiley Interdisciplinary Reviews-RNA

Supraspliceosomes at Defined Functional States Portray the Pre-Assembled Nature of the Pre-mRNA Processing Machine in the Cell Nucleus

(2014) Hani Kotzer-Nevo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control

(2014) Jonathan Bizarro et al.   JOURNAL OF CELL BIOLOGY

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

(2014) Gabrielle Deschamps-Francoeur et al.   NUCLEIC ACIDS RESEARCH

Sudemycin E influences alternative splicing and changes chromatin modifications

(2014) Paolo Convertini et al.   NUCLEIC ACIDS RESEARCH

The Supraspliceosome — A Multi-Task Machine for Regulated Pre-mRNA Processing in the Cell Nucleus

(2014) Kinneret Shefer et al.   Computational and Structural Biotechnology Journal

Box C/D Small Nucleolar RNA (snoRNA) U60 Regulates Intracellular Cholesterol Trafficking

(2013) Katrina A. Brandis et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ZRANB2 localizes to supraspliceosomes and influences the alternative splicing of multiple genes in the transcriptome

(2013) Yee Hwa J. Yang et al.   MOLECULAR BIOLOGY REPORTS

The structure of the box C/D enzyme reveals regulation of RNA methylation

(2013) Audrone Lapinaite et al.   NATURE

Artificial Box C/D RNAs Affect Pre-mRNA Maturation in Human Cells

(2013) Grigoriy A. Stepanov et al.   Biomed Research International

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Function of alternative splicing

(2012) Olga Kelemen et al.   GENE

E2F7, a novel target, is up-regulated by p53 and mediates DNA damage-dependent transcriptional repression

(2012) L. A. Carvajal et al.   GENES & DEVELOPMENT

The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence

(2012) O. Aksoy et al.   GENES & DEVELOPMENT

Genomic analysis of high-risk smoldering multiple myeloma

(2012) L. Lopez-Corral et al.   HAEMATOLOGICA

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs

(2012) M.-L. Bortolin-Cavaille et al.   NUCLEIC ACIDS RESEARCH

Splicing of internal large exons is defined by novel cis -acting sequence elements

(2012) Mohan T. Bolisetty et al.   NUCLEIC ACIDS RESEARCH

ENCODE Data in the UCSC Genome Browser: year 5 update

(2012) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues

(2012) J. Merkin et al.   SCIENCE

Small Nucleolar RNAs U32a, U33, and U35a Are Critical Mediators of Metabolic Stress

(2011) Carlos I. Michel et al.   Cell Metabolism

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

(2011) Robert Willem van Nues et al.   EMBO JOURNAL

Regulation of alternative splicing within the supraspliceosome

(2011) Naama Sebbag-Sznajder et al.   JOURNAL OF STRUCTURAL BIOLOGY

Human box C/D snoRNA processing conservation across multiple cell types

(2011) Michelle S. Scott et al.   NUCLEIC ACIDS RESEARCH

Identification of human miRNA precursors that resemble box C/D snoRNAs

(2011) Motoharu Ono et al.   NUCLEIC ACIDS RESEARCH

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

(2011) Nicholas J. Watkins et al.   Wiley Interdisciplinary Reviews-RNA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Paternally inherited microdeletion at 15q11.2 confirms a significant role for the SNORD116 C/D box snoRNA cluster in Prader–Willi syndrome

(2010) Angela L Duker et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

(2010) Markus Brameier et al.   NUCLEIC ACIDS RESEARCH

Characteristics of Transposable Element Exonization within Human and Mouse

(2010) Noa Sela et al.   PLoS One

Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation

(2010) J. Ge et al.   RNA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

(2009) Wei-Chi Wang et al.   BMC BIOINFORMATICS

Heterogeneous Nuclear Ribonucleoprotein G Regulates Splice Site Selection by Binding to CC(A/C)-rich Regions in Pre-mRNA

(2009) Bettina Heinrich et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Implication of snoRNA U50 in human breast cancer

(2009) Xue-Yuan Dong et al.   Journal of Genetics and Genomics

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

(2009) Mo Chen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells

(2009) T. Ideue et al.   RNA

Human miRNA Precursors with Box H/ACA snoRNA Features

(2009) Michelle S. Scott et al.   PLoS Computational Biology

Expression and Processing of a Small Nucleolar RNA from the Epstein-Barr Virus Genome

(2009) Roland Hutzinger et al.   PLoS Pathogens

Hidden layers of human small RNAs

(2008) Hideya Kawaji et al.   BMC GENOMICS

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

SnoRNA Snord116 (Pwcr1/MBII-85) Deletion Causes Growth Deficiency and Hyperphagia in Mice

(2008) Feng Ding et al.   PLoS One

Structure and Function of the Pre-mRNA Splicing Machine

(2008) Joseph Sperling et al.   STRUCTURE

snoRNA, a Novel Precursor of microRNA in Giardia lamblia

(2008) Ashesh A. Saraiya et al.   PLoS Pathogens