Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015)

(2015) M. J. Adams et al.   ARCHIVES OF VIROLOGY

Past, present, and future of arenavirus taxonomy

(2015) Sheli R. Radoshitzky et al.   ARCHIVES OF VIROLOGY

Phenotypic and molecular diversity of Meyerozyma guilliermondii strains isolated from food and other environmental niches, hints for an incipient speciation

(2015) Laura Corte et al.   FOOD MICROBIOLOGY

ZFIN, The zebrafish model organism database: Updates and new directions

(2015) Leyla Ruzicka et al.   GENESIS

Mouse genome annotation by the RefSeq project

(2015) Kelly M. McGarvey et al.   MAMMALIAN GENOME

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database—the quality controlled standard tool for routine identification of human and animal pathogenic fungi

(2015) Laszlo Irinyi et al.   MEDICAL MYCOLOGY

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

(2015) R. Henrik Nilsson et al.   MICROBES AND ENVIRONMENTS

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates

(2015) Bhanu Rajput et al.   NUCLEIC ACIDS RESEARCH

Promoting an open research culture

(2015) B. A. Nosek et al.   SCIENCE

Nectar sugars and bird visitation define a floral niche for basidiomycetous yeast on the Canary Islands

(2015) Moritz Mittelbach et al.   BMC ECOLOGY

Taxonomic reorganization of the family Bornaviridae

(2014) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

(2014) Yiming Bao et al.   ARCHIVES OF VIROLOGY

PTENα, a PTEN Isoform Translated through Alternative Initiation, Regulates Mitochondrial Function and Energy Metabolism

(2014) Hui Liang et al.   Cell Metabolism

The rise of regulatory RNA

(2014) Kevin V. Morris et al.   NATURE REVIEWS GENETICS

Genenames.org: the HGNC resources in 2015

(2014) Kristian A. Gray et al.   NUCLEIC ACIDS RESEARCH

Update on RefSeq microbial genomes resources

(2014) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

HIV-1, human interaction database: current status and new features

(2014) Danso Ako-Adjei et al.   NUCLEIC ACIDS RESEARCH

Type material in the NCBI Taxonomy Database

(2014) Scott Federhen   NUCLEIC ACIDS RESEARCH

NCBI Viral Genomes Resource

(2014) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Identification and nomenclature of the genus Penicillium

(2014) C.M. Visagie et al.   STUDIES IN MYCOLOGY

Modeling genomic regulatory networks with big data

(2014) Hamid Bolouri   TRENDS IN GENETICS

Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

(2014) Jens Kuhn et al.   Viruses-Basel

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

(2014) C. L. Schoch et al.   Database-The Journal of Biological Databases and Curation

Schistosomes and snails: a molecular encounter

(2014) Matty Knight et al.   Frontiers in Genetics

BACE1 as a Therapeutic Target in Alzheimer’s Disease: Rationale and Current Status

(2013) Genevieve Evin et al.   DRUGS & AGING

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

(2013)   JOURNAL OF HEREDITY

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

(2013)   JOURNAL OF HEREDITY

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Virus Variation Resource—recent updates and future directions

(2013) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

Current status and new features of the Consensus Coding Sequence database

(2013) Catherine M. Farrell et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

A Subset of Histone H2B Genes Produces Polyadenylated mRNAs under a Variety of Cellular Conditions

(2013) Vijayalakshmi Kari et al.   PLoS One

A Secreted PTEN Phosphatase That Enters Cells to Alter Signaling and Survival

(2013) B. D. Hopkins et al.   SCIENCE

Title and imprint page

(2013) Zhi-Qiang Zhang   ZOOTAXA

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

A quantitative atlas of polyadenylation in five mammals

(2012) Adnan Derti et al.   GENOME RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Integrative annotation of chromatin elements from ENCODE data

(2012) Michael M. Hoffman et al.   NUCLEIC ACIDS RESEARCH

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial virus genome annotation—Mustering the troops to fight the sequence onslaught

(2012) J. Rodney Brister et al.   VIROLOGY

PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses

(2012) Yiming Bao et al.   Viruses-Basel

Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)

(2011) Jelle Matthijnssens et al.   ARCHIVES OF VIROLOGY

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Using the Whole-Genome Sequence To Characterize and Name Human Adenoviruses

(2011) D. Seto et al.   JOURNAL OF VIROLOGY

The NIH Roadmap Epigenomics Mapping Consortium

(2010) Bradley E Bernstein et al.   NATURE BIOTECHNOLOGY

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

(2010) James Rodney Brister et al.   Viruses-Basel

Locus Reference Genomic sequences: an improved basis for describing human DNA variants

(2010) Raymond Dalgleish et al.   Genome Medicine