Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

Transcriptome Profiling in Human Diseases: New Advances and Perspectives

(2017) Amelia Casamassimi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Alpha-enolase (ENO1) controls alpha v/beta 3 integrin expression and regulates pancreatic cancer adhesion, invasion, and metastasis

(2017) Moitza Principe et al.   Journal of Hematology & Oncology

Single-Cell and Single-Molecule Analysis of Gene Expression Regulation

(2016) Maria Vera et al.   Annual Review of Genetics

Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges

(2016) Dario Veneziano et al.   HUMAN MUTATION

Next generation sequencing: implications in personalized medicine and pharmacogenomics

(2016) Bahareh Rabbani et al.   Molecular BioSystems

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

(2016) Ryan M. Nottingham et al.   RNA

Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure

(2015) Shiran Naftelberg et al.   Annual Review of Biochemistry

Whole transcriptome analysis with sequencing: methods, challenges and potential solutions

(2015) Zhihua Jiang et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Transcriptomics in cancer diagnostics: developments in technology, clinical research and commercialization

(2015) Monica Sager et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Efficient and quantitative high-throughput tRNA sequencing

(2015) Guanqun Zheng et al.   NATURE METHODS

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

RNA–RNA base-pairing: theme and variations

(2015) Joan Steitz   RNA

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

(2015) Yidan Qin et al.   RNA

The emerging landscape of small nucleolar RNAs in cell biology

(2015) Fabien Dupuis-Sandoval et al.   Wiley Interdisciplinary Reviews-RNA

Controlling translation via modulation of tRNA levels

(2015) Jeremy E. Wilusz   Wiley Interdisciplinary Reviews-RNA

Non-coding RNA: what is functional and what is junk?

(2015) Alexander F. Palazzo et al.   Frontiers in Genetics

The eEF1A Proteins: At the Crossroads of Oncogenesis, Apoptosis, and Viral Infections

(2015) Wasim Abbas et al.   Frontiers in Oncology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

AHNAK: The giant jack of all trades

(2014) T.A. Davis et al.   CELLULAR SIGNALLING

Identification of ENO1 As a Potential Sputum Biomarker for Early-Stage Lung Cancer by Shotgun Proteomics

(2014) Lei Yu et al.   Clinical Lung Cancer

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

(2014) Gabrielle Deschamps-Francoeur et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signal Recognition Particle: An Essential Protein-Targeting Machine

(2013) David Akopian et al.   Annual Review of Biochemistry

U1 snRNP Control of 3´-End Processing and the Therapeutic Application of U1 Inhibition Combined with RNA Interference

(2013) L. Blazquez et al.   CURRENT MOLECULAR MEDICINE

Splatterplots: Overcoming Overdraw in Scatter Plots

(2013) Adrian Mayorga et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Real-time quantitative PCR and droplet digital PCR for plant miRNAs in mammalian blood provide little evidence for general uptake of dietary miRNAs

(2013) Kenneth W. Witwer et al.   RNA Biology

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing

(2013) S. Mohr et al.   RNA

Characterization of in vitro transcription amplification linearity and variability in the low copy number regime using External RNA Control Consortium (ERCC) spike-ins

(2012) Jason G. Kralj et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Comparison of Droplet Digital PCR to Real-Time PCR for Quantitative Detection of Cytomegalovirus

(2012) R. T. Hayden et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Estrogen Promotes Prostate Cancer Cell Migration via Paracrine Release of ENO1 from Stromal Cells

(2012) Lin Yu et al.   MOLECULAR ENDOCRINOLOGY

Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation

(2012) Alexandra S. Whale et al.   NUCLEIC ACIDS RESEARCH

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

The quantitative proteome of a human cell line

(2011) M. Beck et al.   Molecular Systems Biology

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

(2011) Nicholas J. Watkins et al.   Wiley Interdisciplinary Reviews-RNA

Biogenesis of the signal recognition particle

(2010) Eileen Leung et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

ENO1, a potential prognostic head and neck cancer marker, promotes transformation partly via chemokine CCL20 induction

(2010) Sen-Tien Tsai et al.   EUROPEAN JOURNAL OF CANCER

U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

(2010) Daisuke Kaida et al.   NATURE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Splicing of mRNA precursors: the role of RNAs and proteins in catalysis

(2009) Chaim Wachtel et al.   Molecular BioSystems

High-throughput quantification of splicing isoforms

(2009) J.-P. Brosseau et al.   RNA

Absolute quantification of microRNAs by using a universal reference

(2009) U. Bissels et al.   RNA

Different Expression and Clinical Role of S100A4 in Serous Ovarian Carcinoma at Different Anatomic Sites

(2009) Gunhild M. Mælandsmo et al.   TUMOR BIOLOGY

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Anti-cooperative assembly of the SRP19 and SRP68/72 components of the signal recognition particle

(2008) Tuhin Subhra Maity et al.   BIOCHEMICAL JOURNAL

Expression of human snRNA genes from beginning to end

(2008) Sylvain Egloff et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies

(2008) Michael C Ryan et al.   BMC BIOINFORMATICS