Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution

Super-Resolution Imaging of the Extracellular Space in Living Brain Tissue

(2018) Jan Tønnesen et al.   CELL

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster

(2018) Zhihao Zheng et al.   CELL

X10 expansion microscopy enables 25‐nm resolution on conventional microscopes

(2018) Sven Truckenbrodt et al.   EMBO REPORTS

Genetic Reagents for Making Split-GAL4 Lines inDrosophila

(2018) Heather Dionne et al.   GENETICS

Characterization of LAMP1-labeled nondegradative lysosomal and endocytic compartments in neurons

(2018) Xiu-Tang Cheng et al.   JOURNAL OF CELL BIOLOGY

Superresolution imaging of Drosophila tissues using expansion microscopy

(2018) Nan Jiang et al.   MOLECULAR BIOLOGY OF THE CELL

Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms

(2018) Tsung-Li Liu et al.   SCIENCE

Genetic Reagents for Making Split-GAL4 Lines inDrosophila

(2018) Heather Dionne et al.   GENETICS

Facilitating Neuron-Specific Genetic Manipulations inDrosophila melanogasterUsing a Split GAL4 Repressor

(2017) Michael-John Dolan et al.   GENETICS

The complete connectome of a learning and memory centre in an insect brain

(2017) Katharina Eichler et al.   NATURE

Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy

(2017) Yongxin Zhao et al.   NATURE BIOTECHNOLOGY

Iterative expansion microscopy

(2017) Jae-Byum Chang et al.   NATURE METHODS

Superresolution expansion microscopy reveals the three-dimensional organization of theDrosophilasynaptonemal complex

(2017) Cori K. Cahoon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expansion microscopy of zebrafish for neuroscience and developmental biology studies

(2017) Limor Freifeld et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Homer1a drives homeostatic scaling-down of excitatory synapses during sleep

(2017) Graham H. Diering et al.   SCIENCE

Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration

(2017) Young-Gyu Yoon et al.   Frontiers in Computational Neuroscience

Nuclear microenvironments modulate transcription from low-affinity enhancers

(2017) Albert Tsai et al.   eLife

Presynaptic LRP4 promotes synapse number and function of excitatory CNS neurons

(2017) Timothy J Mosca et al.   eLife

Enhanced FIB-SEM systems for large-volume 3D imaging

(2017) C Shan Xu et al.   eLife

A connectome of a learning and memory center in the adult Drosophila brain

(2017) Shin-ya Takemura et al.   eLife

Facilitating Neuron-Specific Genetic Manipulations inDrosophila melanogasterUsing a Split GAL4 Repressor

(2017) Michael-John Dolan et al.   GENETICS

A new brain dopamine-deficientDrosophilaand its pharmacological and genetic rescue

(2016) K. Cichewicz et al.   GENES BRAIN AND BEHAVIOR

Reversible Disruption of Neuronal Mitochondria by Ischemic and Traumatic Injury Revealed by Quantitative Two-Photon Imaging in the Neocortex of Anesthetized Mice

(2016) Mikhail Kislin et al.   JOURNAL OF NEUROSCIENCE

Membrane dynamics of dividing cells imaged by lattice light-sheet microscopy

(2016) François Aguet et al.   MOLECULAR BIOLOGY OF THE CELL

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies

(2016) Paul W Tillberg et al.   NATURE BIOTECHNOLOGY

Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues

(2016) Taeyun Ku et al.   NATURE BIOTECHNOLOGY

Expansion microscopy with conventional antibodies and fluorescent proteins

(2016) Tyler J Chozinski et al.   NATURE METHODS

High-density three-dimensional localization microscopy across large volumes

(2016) Wesley R Legant et al.   NATURE METHODS

In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus

(2016) Sheel Shah et al.   NEURON

High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization

(2016) Jeffrey R. Moffitt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neuronal activity controls transsynaptic geometry

(2016) Oleg O. Glebov et al.   Scientific Reports

Dopaminergic neurons write and update memories with cell-type-specific rules

(2016) Yoshinori Aso et al.   eLife

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Maturation of active zone assembly byDrosophilaBruchpilot

(2016) Wernher Fouquet et al.   JOURNAL OF CELL BIOLOGY

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Construction of an instant structured illumination microscope

(2015) Alistair Curd et al.   METHODS

Ultrastructurally smooth thick partitioning and volume stitching for large-scale connectomics

(2015) Kenneth J Hayworth et al.   NATURE METHODS

CIDRE: an illumination-correction method for optical microscopy

(2015) Kevin Smith et al.   NATURE METHODS

BigDataViewer: visualization and processing for large image data sets

(2015) Tobias Pietzsch et al.   NATURE METHODS

Correlated light and electron microscopy: ultrastructure lights up!

(2015) Pascal de Boer et al.   NATURE METHODS

GABAergic regulation of cerebellar NG2 cell development is altered in perinatal white matter injury

(2015) Marzieh Zonouzi et al.   NATURE NEUROSCIENCE

Cell type– and brain region–resolved mouse brain proteome

(2015) Kirti Sharma et al.   NATURE NEUROSCIENCE

Super-resolution spinning-disk confocal microscopy using optical photon reassignment

(2015) Takuya Azuma et al.   OPTICS EXPRESS

Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system

(2015) Aljoscha Nern et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Labeling of active neural circuits in vivo with designed calcium integrators

(2015) B. F. Fosque et al.   SCIENCE

Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics

(2015) D. Li et al.   SCIENCE

Expansion microscopy

(2015) F. Chen et al.   SCIENCE

Applying superresolution localization-based microscopy to neurons

(2015) Haining Zhong   SYNAPSE

Anatomy and physiology of the thick-tufted layer 5 pyramidal neuron

(2015) Srikanth Ramaswamy et al.   Frontiers in Cellular Neuroscience

FIB/SEM technology and high-throughput 3D reconstruction of dendritic spines and synapses in GFP-labeled adult-generated neurons

(2015) Carles Bosch et al.   Frontiers in Neuroanatomy

Image artifacts in Single Molecule Localization Microscopy: why optimization of sample preparation protocols matters

(2015) Donna R. Whelan et al.   Scientific Reports

Single Serotonergic Neurons that Modulate Aggression in Drosophila

(2014) Olga V. Alekseyenko et al.   CURRENT BIOLOGY

Spine neck plasticity regulates compartmentalization of synapses

(2014) Jan Tønnesen et al.   NATURE NEUROSCIENCE

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Distinct Profiles of Myelin Distribution Along Single Axons of Pyramidal Neurons in the Neocortex

(2014) G. S. Tomassy et al.   SCIENCE

Quantitative super-resolution imaging of Bruchpilot distinguishes active zone states

(2014) Nadine Ehmann et al.   Nature Communications

Super-resolution 2-photon microscopy reveals that the morphology of each dendritic spine correlates with diffusive but not synaptic properties

(2014) Kevin Takasaki et al.   Frontiers in Neuroanatomy

Three-dimensional distribution of cortical synapses: a replicated point pattern-based analysis

(2014) Laura Anton-Sanchez et al.   Frontiers in Neuroanatomy

The neuronal architecture of the mushroom body provides a logic for associative learning

(2014) Yoshinori Aso et al.   eLife

Two-Photon in vivo Imaging of Dendritic Spines in the Mouse Cortex Using a Thinned-skull Preparation

(2014) Xinzhu Yu et al.   Jove-Journal of Visualized Experiments

TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

(2013) Alessandro Bria et al.   BMC BIOINFORMATICS

Dendritic Arborization and Spine Dynamics Are Abnormal in the Mouse Model of MECP2 Duplication Syndrome

(2013) M. Jiang et al.   JOURNAL OF NEUROSCIENCE

Random convergence of olfactory inputs in the Drosophila mushroom body

(2013) Sophie J. C. Caron et al.   NATURE

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography

(2013) Jong-Cheol Rah et al.   Frontiers in Neural Circuits

Beyond the connectome: How neuromodulators shape neural circuits

(2012) Cornelia I. Bargmann   BIOESSAYS

ImgLib2—generic image processing in Java

(2012) Tobias Pietzsch et al.   BIOINFORMATICS

Two Dopaminergic Neurons Signal to the Dorsal Fan-Shaped Body to Promote Wakefulness in Drosophila

(2012) Qili Liu et al.   CURRENT BIOLOGY

Dendritic spines: from structure to in vivo function

(2012) Nathalie L Rochefort et al.   EMBO REPORTS

Superresolution imaging for neuroscience

(2012) Jan Tønnesen et al.   EXPERIMENTAL NEUROLOGY

Different classes of input and output neurons reveal new features in microglomeruli of the adult Drosophila mushroom body calyx

(2012) Nancy J. Butcher et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Loss of syd-1 from R7 Neurons Disrupts Two Distinct Phases of Presynaptic Development

(2012) S. Holbrook et al.   JOURNAL OF NEUROSCIENCE

The Energetics of CNS White Matter

(2012) J. J. Harris et al.   JOURNAL OF NEUROSCIENCE

Targeted Ablation of Oligodendrocytes Induces Axonal Pathology Independent of Overt Demyelination

(2012) L.-J. Oluich et al.   JOURNAL OF NEUROSCIENCE

Immunolabeling artifacts and the need for live-cell imaging

(2012) Ulrike Schnell et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Actin, Spectrin, and Associated Proteins Form a Periodic Cytoskeletal Structure in Axons

(2012) K. Xu et al.   SCIENCE

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

TACE (ADAM17) inhibits Schwann cell myelination

(2011) Rosa La Marca et al.   NATURE NEUROSCIENCE

High-throughput, detailed, cell-specific neuroanatomy of dendritic spines using microinjection and confocal microscopy

(2011) Dani Dumitriu et al.   Nature Protocols

Axon Physiology

(2011) Dominique Debanne et al.   PHYSIOLOGICAL REVIEWS

Mapping of fluorescent protein-expressing neurons and axon pathways in adult and developing Thy1-eYFP-H transgenic mice

(2010) Cesar Porrero et al.   BRAIN RESEARCH

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Refinement of Tools for Targeted Gene Expression in Drosophila

(2010) B. D. Pfeiffer et al.   GENETICS

A Syd-1 homologue regulates pre- and postsynaptic maturation inDrosophila

(2010) David Owald et al.   JOURNAL OF CELL BIOLOGY

Myelination and support of axonal integrity by glia

(2010) Klaus-Armin Nave   NATURE

Superresolution Imaging of Chemical Synapses in the Brain

(2010) Adish Dani et al.   NEURON

Image Scanning Microscopy

(2010) Claus B. Müller et al.   PHYSICAL REVIEW LETTERS

A Pair of Dopamine Neurons Target the D1-Like Dopamine Receptor DopR in the Central Complex to Promote Ethanol-Stimulated Locomotion in Drosophila

(2010) Eric C. Kong et al.   PLoS One

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

The human brain in numbers: a linearly scaled-up primate brain

(2009) Suzana Herculano-Houzel   Frontiers in Human Neuroscience

Bcl-xLincreases mitochondrial fission, fusion, and biomass in neurons

(2009) Sarah B. Berman et al.   JOURNAL OF CELL BIOLOGY

XuvTools: free, fast and reliable stitching of large 3D datasets

(2009) M. EMMENLAUER et al.   JOURNAL OF MICROSCOPY

Eight different types of dopaminergic neurons innervate the Drosophila mushroom body neuropil: anatomical and physiological heterogeneity

(2009) Zhengmei Mao   Frontiers in Neural Circuits

The Interscutularis Muscle Connectome

(2009) Ju Lu et al.   PLOS BIOLOGY

Multiple sclerosis

(2008) Alastair Compston et al.   LANCET

Automated Three-Dimensional Detection and Shape Classification of Dendritic Spines from Fluorescence Microscopy Images

(2008) Alfredo Rodriguez et al.   PLoS One

Mitochondrial Morphogenesis, Dendrite Development, and Synapse Formation in Cerebellum Require both Bcl-w and the Glutamate Receptor δ2

(2008) Qiong A. Liu et al.   PLoS Genetics