Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration

Iterative expansion microscopy

(2017) Jae-Byum Chang et al.   NATURE METHODS

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies

(2016) Paul W Tillberg et al.   NATURE BIOTECHNOLOGY

Nanoscale imaging of RNA with expansion microscopy

(2016) Fei Chen et al.   NATURE METHODS

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA

(2016) Justus M. Kebschull et al.   NEURON

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

SegEM: Efficient Image Analysis for High-Resolution Connectomics

(2015) Manuel Berning et al.   NEURON

Spatially resolved, highly multiplexed RNA profiling in single cells

(2015) K. H. Chen et al.   SCIENCE

Expansion microscopy

(2015) F. Chen et al.   SCIENCE

Crowdsourcing the creation of image segmentation algorithms for connectomics

(2015) Ignacio Arganda-Carreras et al.   Frontiers in Neuroanatomy

The Retinal Projectome Reveals Brain-Area-Specific Visual Representations Generated by Ganglion Cell Diversity

(2014) Estuardo Robles et al.   CURRENT BIOLOGY

In vivo generation of DNA sequence diversity for cellular barcoding

(2014) Ian D. Peikon et al.   NUCLEIC ACIDS RESEARCH

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Highly Multiplexed Subcellular RNA Sequencing in Situ

(2014) J. H. Lee et al.   SCIENCE

Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling

(2014) Nobuhiko Miyasaka et al.   Nature Communications

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages

(2014) Juan Nunez-Iglesias et al.   Frontiers in Neuroinformatics

Improved tools for the Brainbow toolbox

(2013) Dawen Cai et al.   NATURE METHODS

Machine Learning of Hierarchical Clustering to Segment 2D and 3D Images

(2013) Juan Nunez-Iglesias et al.   PLoS One

Sequencing the Connectome

(2012) Anthony M. Zador et al.   PLOS BIOLOGY

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

(2011) Rong Lu et al.   NATURE BIOTECHNOLOGY

High-throughput, detailed, cell-specific neuroanatomy of dendritic spines using microinjection and confocal microscopy

(2011) Dani Dumitriu et al.   Nature Protocols

Advances in Light Microscopy for Neuroscience

(2009) Brian A. Wilt et al.   Annual Review of Neuroscience

I5S: Wide-Field Light Microscopy with 100-nm-Scale Resolution in Three Dimensions

(2008) Lin Shao et al.   BIOPHYSICAL JOURNAL