A platform for brain-wide imaging and reconstruction of individual neurons

A motor cortex circuit for motor planning and movement

(2015) Nuo Li et al.   NATURE

Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

(2014) Etsuo A. Susaki et al.   CELL

iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging

(2014) Nicolas Renier et al.   CELL

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

A comprehensive thalamocortical projection map at the mesoscopic level

(2014) Barbara J Hunnicutt et al.   NATURE NEUROSCIENCE

The Circuit Architecture of Whole Brains at the Mesoscopic Scale

(2014) Partha P. Mitra   NEURON

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis

(2014) Hanchuan Peng et al.   Nature Communications

Active learning of neuron morphology for accurate automated tracing of neurites

(2014) Rohan Gala et al.   Frontiers in Neuroanatomy

Complete morphologies of basal forebrain cholinergic neurons in the mouse

(2014) Hao Wu et al.   eLife

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

CLARITY for mapping the nervous system

(2013) Kwanghun Chung et al.   NATURE METHODS

Improved tools for the Brainbow toolbox

(2013) Dawen Cai et al.   NATURE METHODS

SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction

(2013) Meng-Tsen Ke et al.   NATURE NEUROSCIENCE

Corticostriatal connectivity and its role in disease

(2013) Gordon M. G. Shepherd   NATURE REVIEWS NEUROSCIENCE

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution

(2013) Hui Gong et al.   NEUROIMAGE

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

The Subthalamic Nucleus Is One of Multiple Innervation Sites for Long-Range Corticofugal Axons: A Single-Axon Tracing Study in the Rat

(2012) T. Kita et al.   JOURNAL OF NEUROSCIENCE

Nonlinear dendritic integration of sensory and motor input during an active sensing task

(2012) Ning-long Xu et al.   NATURE

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Three-dimensional imaging of solvent-cleared organs using 3DISCO

(2012) Ali Ertürk et al.   Nature Protocols

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

A Morphological Analysis of Thalamocortical Axon Fibers of Rat Posterior Thalamic Nuclei: A Single Neuron Tracing Study with Viral Vectors

(2011) Sachi Ohno et al.   CEREBRAL CORTEX

Large-Scale Automated Histology in the Pursuit of Connectomes

(2011) D. Kleinfeld et al.   JOURNAL OF NEUROSCIENCE

Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons

(2011) Sulagna Ghosh et al.   NATURE

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

Three-dimensional axon morphologies of individual layer 5 neurons indicate cell type-specific intracortical pathways for whisker motion and touch

(2011) M. Oberlaender et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Machines that learn to segment images: a crucial technology for connectomics

(2010) Viren Jain et al.   CURRENT OPINION IN NEUROBIOLOGY

Exploring the brain network: A review on resting-state fMRI functional connectivity

(2010) Martijn P. van den Heuvel et al.   EUROPEAN NEUROPSYCHOPHARMACOLOGY

The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets

(2010) J.R. ANDERSON et al.   JOURNAL OF MICROSCOPY

The Functional Properties of Barrel Cortex Neurons Projecting to the Primary Motor Cortex

(2010) T. R. Sato et al.   JOURNAL OF NEUROSCIENCE

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

Two Types of Thalamocortical Projections from the Motor Thalamic Nuclei of the Rat: A Single Neuron-Tracing Study Using Viral Vectors

(2009) Eriko Kuramoto et al.   CEREBRAL CORTEX

Plasma-mediated ablation: an optical tool for submicrometer surgery on neuronal and vascular systems

(2009) Philbert S Tsai et al.   CURRENT OPINION IN BIOTECHNOLOGY

White matter atlases based on diffusion tensor imaging

(2009) Susumu Mori et al.   CURRENT OPINION IN NEUROLOGY

Parallel processing strategies of the primate visual system

(2009) Jonathan J. Nassi et al.   NATURE REVIEWS NEUROSCIENCE

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

(2009) Jason W. Bohland et al.   PLoS Computational Biology

Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain

(2008) D. MAYERICH et al.   JOURNAL OF MICROSCOPY

Genetically-Directed, Cell Type-Specific Sparse Labeling for the Analysis of Neuronal Morphology

(2008) Thomas Rotolo et al.   PLoS One