Genomics of crop wild relatives: expanding the gene pool for crop improvement
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Title
Genomics of crop wild relatives: expanding the gene pool for crop improvement
Authors
Keywords
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Journal
PLANT BIOTECHNOLOGY JOURNAL
Volume 14, Issue 4, Pages 1070-1085
Publisher
Wiley
Online
2015-08-27
DOI
10.1111/pbi.12454
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- (2014) M.S. Ngu et al. GENETICS AND MOLECULAR RESEARCH
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- (2014) Weirong Xu et al. PLANT MOLECULAR BIOLOGY
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- (2014) Christopher P. Middleton et al. PLoS One
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- (2014) Gopala Krishnan S. et al. PLoS One
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- (2014) Jianbin Zeng et al. PLoS One
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- (2014) Kiran B. Gaikwad et al. PLoS One
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- (2008) Hannes Dempewolf et al. GENETIC RESOURCES AND CROP EVOLUTION
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- (2007) B.P. Mallikarjuna Swamy et al. BIOTECHNOLOGY ADVANCES
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