Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

Genome-wide identification and comparative expression analysis of NBS–LRR-encoding genes upon Colletotrichum gloeosporioides infection in two ecotypes of Fragaria vesca

(2013) Jing Li et al.   GENE

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Targeted Sequence Capture Provides Insight into Genome Structure and Genetics of Male Sterility in a Gynodioecious Diploid Strawberry, Fragaria vesca ssp. bracteata (Rosaceae)

(2013) Jacob A. Tennessen et al.   G3-Genes Genomes Genetics

Conservation and loss of ribosomal RNA gene sites in diploid and polyploid Fragaria (Rosaceae)

(2012) Bo Liu et al.   BMC PLANT BIOLOGY

Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability

(2012) S. N. Isobe et al.   DNA RESEARCH

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Advances in plant genome sequencing

(2012) John P. Hamilton et al.   PLANT JOURNAL

Mutation in TERMINAL FLOWER1 Reverses the Photoperiodic Requirement for Flowering in the Wild Strawberry Fragaria vesca

(2012) E. A. Koskela et al.   PLANT PHYSIOLOGY

A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection

(2012) D. J. Sargent et al.   THEORETICAL AND APPLIED GENETICS

The genome of Prunus mume

(2012) Qixiang Zhang et al.   Nature Communications

Current challenges in de novo plant genome sequencing and assembly

(2012) Michael C Schatz et al.   GENOME BIOLOGY

Review of General Algorithmic Features for Genome Assemblers for Next Generation Sequencers

(2012) Bilal Wajid et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

The genome of the fire ant Solenopsis invicta

(2011) Y. Wurm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Decaploidy in Fragaria iturupensis (Rosaceae)

(2009) Kim E. Hummer et al.   AMERICAN JOURNAL OF BOTANY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): New insights from phylogenetic analyses of low-copy nuclear genes

(2009) M. Rousseau-Gueutin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

GGT 2.0: Versatile Software for Visualization and Analysis of Genetic Data

(2008) Ralph van Berloo   JOURNAL OF HEREDITY