Plant DNA barcoding: from gene to genome

20,000 species and five key markers: The status of molecular bryophyte phylogenetics

(2014) M. Stech et al.   Phytotaxa

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

(2013) Jun-Bo Yang et al.   BMC EVOLUTIONARY BIOLOGY

Next-Gen phylogeography of rainforest trees: exploring landscape-level cpDNA variation from whole-genome sequencing

(2013) M. van der Merwe et al.   Molecular Ecology Resources

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa

(2013) Ibrar Ahmed et al.   Molecular Ecology Resources

Chloroplast genome analysis of Australian eucalypts – Eucalyptus, Corymbia, Angophora, Allosyncarpia and Stockwellia (Myrtaceae)

(2013) Michael J. Bayly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species-Specific Identification from Incomplete Sampling: Applying DNA Barcodes to Monitoring Invasive Solanum Plants

(2013) Wei Zhang et al.   PLoS One

Hybridization may facilitate in situ survival of endemic species through periods of climate change

(2013) Matthias Becker et al.   Nature Climate Change

A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes

(2013) Gregory W. Stull et al.   Applications in Plant Sciences

Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree

(2013) Hannah McPherson et al.   BMC ECOLOGY

Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA

(2012) Nolan Kane et al.   AMERICAN JOURNAL OF BOTANY

Use of DNA Barcoding to Reveal Species Composition of Convenience Seafood

(2012) ELIZABETH HUXLEY-JONES et al.   CONSERVATION BIOLOGY

DNA barcoding as a new tool for food traceability

(2012) Andrea Galimberti et al.   FOOD RESEARCH INTERNATIONAL

Mutational Dynamics of Aroid Chloroplast Genomes

(2012) Ibrar Ahmed et al.   Genome Biology and Evolution

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

An Improved Chloroplast DNA Extraction Procedure for Whole Plastid Genome Sequencing

(2012) Chao Shi et al.   PLoS One

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA

(2012) Jingyuan Song et al.   PLoS One

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

(2011) Shannon CK Straub et al.   BMC GENOMICS

The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies

(2011) L. Doorduin et al.   DNA RESEARCH

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

(2011) Dai-Yong Kuang et al.   GENOME

Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

Systematic Error in Seed Plant Phylogenomics

(2011) Bojian Zhong et al.   Genome Biology and Evolution

JML: testing hybridization from species trees

(2011) SIMON JOLY   Molecular Ecology Resources

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

(2011) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species Identification of Medicinal Pteridophytes by a DNA Barcode Marker, the Chloroplast psbA-trnH Intergenic Region

(2010) Xin-Ye Ma et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

DNA barcoding of the Lemnaceae, a family of aquatic monocots

(2010) Wenqin Wang et al.   BMC PLANT BIOLOGY

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

(2010) Fu-Hui Wu et al.   BMC PLANT BIOLOGY

Applying plant DNA barcodes for Rosaceae species identification

(2010) Xiaohui Pang et al.   CLADISTICS

Localized hypermutation and associated gene losses in legume chloroplast genomes

(2010) A. M. Magee et al.   GENOME RESEARCH

Identification of medicinal plants in the family Fabaceae using a potential DNA barcode ITS2

(2010) Ting Gao et al.   JOURNAL OF ETHNOPHARMACOLOGY

DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species

(2010) JIE LIU et al.   Molecular Ecology Resources

Chloroplast genome sequences from total DNA for plant identification

(2010) Catherine J. Nock et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of Fabaceae Plants Using the DNA BarcodematK

(2010) Ting Gao et al.   PLANTA MEDICA

Using DNA Barcoding to Identify Species within Euphorbiaceae

(2010) Xiaohui Pang et al.   PLANTA MEDICA

Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species

(2010) Shilin Chen et al.   PLoS One

Intraspecific Inversions Pose a Challenge for the trnH-psbA Plant DNA Barcode

(2010) Barbara A. Whitlock et al.   PLoS One

Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

(2010) Atsushi Ebihara et al.   PLoS One

Assessment of candidate plant DNA barcodes using the Rutaceae family

(2010) Kun Luo et al.   Science China-Life Sciences

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines

(2009) Shashi Kumar et al.   BMC PLANT BIOLOGY

DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranunculoidesL.f.), from non-invasive relatives

(2009) C. C. M. VAN DE WIEL et al.   Molecular Ecology Resources

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

(2009) ARON J. FAZEKAS et al.   Molecular Ecology Resources

Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants

(2009) MICHELLE L. HOLLINGSWORTH et al.   Molecular Ecology Resources

Identification ofDendrobiumSpecies by a Candidate DNA Barcode Sequence: The ChloroplastpsbA-trnHIntergenic Region

(2009) Hui Yao et al.   PLANTA MEDICA

Gene Order Phylogeny and the Evolution of Methanogens

(2009) Haiwei Luo et al.   PLoS One

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barcoding of Plants and Fungi

(2009) M. W. Chase et al.   SCIENCE

DNA barcoding plants in biodiversity hot spots: Progress and outstanding questions

(2008) P M Hollingsworth   HEREDITY

Difficulties in Testing for Covarion-Like Properties of Sequences under the Confounding Influence of Changing Proportions of Variable Sites

(2008) N. Gruenheit et al.   MOLECULAR BIOLOGY AND EVOLUTION

Botany without borders: barcoding in focus

(2008) NOLAN C. KANE et al.   MOLECULAR ECOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Genome-Based Approaches to the Authentication of Medicinal Plants

(2008) Nikolaus Sucher et al.   PLANTA MEDICA

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

(2008) Aron J. Fazekas et al.   PLoS One

An Optimized Chloroplast DNA Extraction Protocol for Grasses (Poaceae) Proves Suitable for Whole Plastid Genome Sequencing and SNP Detection

(2008) Kerstin Diekmann et al.   PLoS One

Gene Order Phylogeny of the Genus Prochlorococcus

(2008) Haiwei Luo et al.   PLoS One

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing candidate plant barcode regions in the Myristicaceae

(2007) S. G. NEWMASTER et al.   Molecular Ecology Resources