Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum
Authors
Keywords
<em class=EmphasisTypeItalic >Sorghum propinquum</em>, Transcriptome, Illumina sequencing, Aerial-shoot, Rhizome
Journal
PLANT MOLECULAR BIOLOGY
Volume 84, Issue 3, Pages 315-327
Publisher
Springer Nature
Online
2013-10-08
DOI
10.1007/s11103-013-0135-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genetic variation and expression diversity between grain and sweet sorghum lines
- (2013) Shu-Ye Jiang et al. BMC GENOMICS
- Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon
- (2013) B. Walters et al. DNA RESEARCH
- Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-Bipolaris sorghicola interaction
- (2012) Hiroshi Mizuno et al. BMC PLANT BIOLOGY
- Post-translational regulation of WRKY transcription factors in plant immunity
- (2012) Nobuaki Ishihama et al. CURRENT OPINION IN PLANT BIOLOGY
- Genome-wide Transcription Factor Gene Prediction and their Expressional Tissue-Specificities in MaizeF
- (2012) Yi Jiang et al. Journal of Integrative Plant Biology
- Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor × S. propinquum population
- (2012) Jacob D. Washburn et al. MOLECULAR BREEDING
- Proteomic rewiring through transcriptomic diversity
- (2012) Darren J. Burgess NATURE REVIEWS GENETICS
- S-adenosyl-l-methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity
- (2012) Bram Van de Poel et al. PHYSIOLOGIA PLANTARUM
- The Florigen Genes FT and TSF Modulate Lateral Shoot Outgrowth in Arabidopsis thaliana
- (2012) Kazuhisa Hiraoka et al. PLANT AND CELL PHYSIOLOGY
- ArabidopsisPYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid
- (2012) Miguel Gonzalez-Guzman et al. PLANT CELL
- Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis
- (2012) Y.-M. Chang et al. PLANT PHYSIOLOGY
- Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
- (2012) A. Kakumanu et al. PLANT PHYSIOLOGY
- ERF5 and ERF6 Play Redundant Roles as Positive Regulators of JA/Et-Mediated Defense against Botrytis cinerea in Arabidopsis
- (2012) Caroline S. Moffat et al. PLoS One
- Alternative splicing in plants – coming of age
- (2012) Naeem H. Syed et al. TRENDS IN PLANT SCIENCE
- AUX/LAX family of auxin influx carriers—an overview
- (2012) Ranjan Swarup et al. Frontiers in Plant Science
- Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid
- (2011) Diana V Dugas et al. BMC GENOMICS
- Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata
- (2011) Fengyi Hu et al. BMC PLANT BIOLOGY
- Sweet sorghum as a model system for bioenergy crops
- (2011) Martín Calviño et al. CURRENT OPINION IN BIOTECHNOLOGY
- A jacalin-related lectin-like gene in wheat is a component of the plant defence system
- (2011) Yang Xiang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Ethylene-Responsive Element-Binding Factor 5, ERF5, Is Involved in Chitin-Induced Innate Immunity Response
- (2011) Geon Hui Son et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Arabidopsis ORGAN SIZE RELATED1 regulates organ growth and final organ size in orchestration with ARGOS and ARL
- (2011) Guanping Feng et al. NEW PHYTOLOGIST
- KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
- (2011) Chen Xie et al. NUCLEIC ACIDS RESEARCH
- Unique Defense Strategy by the Endoplasmic Reticulum Body in Plants
- (2011) K. Yamada et al. PLANT AND CELL PHYSIOLOGY
- Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
- (2011) Pavana J. Hiremath et al. PLANT BIOTECHNOLOGY JOURNAL
- VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation
- (2011) Masatoshi Yamaguchi et al. PLANT JOURNAL
- BBX32, an Arabidopsis B-Box Protein, Functions in Light Signaling by Suppressing HY5-Regulated Gene Expression and Interacting with STH2/BBX21
- (2011) H. E. Holtan et al. PLANT PHYSIOLOGY
- The AP2/ERF Transcription Factor AtERF73/HRE1 Modulates Ethylene Responses during Hypoxia in Arabidopsis
- (2011) C.-Y. Yang et al. PLANT PHYSIOLOGY
- Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids
- (2011) R. Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversification of P450 Genes During Land Plant Evolution
- (2010) Masaharu Mizutani et al. Annual Review of Plant Biology
- RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
- (2010) Andrew J Severin et al. BMC PLANT BIOLOGY
- Cytochrome P450 metabolizing fatty acids in plants: characterization and physiological roles
- (2010) Franck Pinot et al. FEBS Journal
- Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
- (2010) T. Lu et al. GENOME RESEARCH
- Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
- (2010) G. Zhang et al. GENOME RESEARCH
- agriGO: a GO analysis toolkit for the agricultural community
- (2010) Zhou Du et al. NUCLEIC ACIDS RESEARCH
- PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock
- (2010) N. Nakamichi et al. PLANT CELL
- Expression and Functional Analyses of EXO70 Genes in Arabidopsis Implicate Their Roles in Regulating Cell Type-Specific Exocytosis
- (2010) S. Li et al. PLANT PHYSIOLOGY
- Defining the boundaries: structure and function of LOB domain proteins
- (2010) Christine Majer et al. TRENDS IN PLANT SCIENCE
- Mechanism of Auxin-Regulated Gene Expression in Plants
- (2009) Elisabeth J. Chapman et al. Annual Review of Genetics
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Characterization of WRKY co-regulatory networks in rice and Arabidopsis
- (2009) Stefano Berri et al. BMC PLANT BIOLOGY
- LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis
- (2009) D.-K. Lee et al. DEVELOPMENT
- Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice
- (2009) Mukesh Jain et al. FEBS Journal
- Genome-wide mapping of alternative splicing in Arabidopsis thaliana
- (2009) S. A. Filichkin et al. GENOME RESEARCH
- The Sorghum bicolor genome and the diversification of grasses
- (2009) Andrew H. Paterson et al. NATURE
- A Pivotal Role of the Basic Leucine Zipper Transcription Factor bZIP53 in the Regulation of Arabidopsis Seed Maturation Gene Expression Based on Heterodimerization and Protein Complex Formation
- (2009) R. Alonso et al. PLANT CELL
- The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice
- (2009) Y. Zhao et al. PLANT CELL
- A role for circadian evening elements in cold-regulated gene expression in Arabidopsis
- (2009) Michael D. Mikkelsen et al. PLANT JOURNAL
- Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice
- (2009) Yidan Ouyang et al. PLANT MOLECULAR BIOLOGY
- Arabidopsis IAR4 Modulates Auxin Response by Regulating Auxin Homeostasis
- (2009) M. Quint et al. PLANT PHYSIOLOGY
- AGAMOUS Controls GIANT KILLER, a Multifunctional Chromatin Modifier in Reproductive Organ Patterning and Differentiation
- (2009) Kian-Hong Ng et al. PLOS BIOLOGY
- Bio-Fuel Crops Research for Energy Security and Rural Development in Developing Countries
- (2008) Belum V. S. Reddy et al. BioEnergy Research
- SOAP: short oligonucleotide alignment program
- (2008) R. Li et al. BIOINFORMATICS
- An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana
- (2008) Jürgen Ehlting et al. BMC PLANT BIOLOGY
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense
- (2008) K.-C. Kim et al. PLANT CELL
- Histone Modifications and Expression of Light-Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions
- (2008) L. Guo et al. PLANT PHYSIOLOGY
- Identification of Negative cis-Acting Elements in Response to Copper in the Chloroplastic Iron Superoxide Dismutase Gene of the Moss Barbula unguiculata
- (2008) M. Nagae et al. PLANT PHYSIOLOGY
- Global Characterization of Cell-Specific Gene Expression through Fluorescence-Activated Sorting of Nuclei
- (2008) C. Zhang et al. PLANT PHYSIOLOGY
- GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses
- (2008) A. Yilmaz et al. PLANT PHYSIOLOGY
- Conserved Daily Transcriptional Programs in Carica papaya
- (2008) Anna Zdepski et al. Tropical Plant Biology
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More