Cassava genome from a wild ancestor to cultivated varieties

Cyanogenic Glycosides: Synthesis, Physiology, and Phenotypic Plasticity

(2014) Roslyn M. Gleadow et al.   Annual Review of Plant Biology

Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination

(2013) Marco Nardini et al.   CELL

Development of genomics-based genotyping platforms and their applications in rice breeding

(2013) Haodong Chen et al.   CURRENT OPINION IN PLANT BIOLOGY

Functional genomics based understanding of rice endosperm development

(2013) Shi-Rong Zhou et al.   CURRENT OPINION IN PLANT BIOLOGY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

(2013) Zhenhua Peng et al.   NATURE GENETICS

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Characterization and Expression Patterns of microRNAs Involved in Rice Grain Filling

(2013) Ting Peng et al.   PLoS One

Transposon Variants and Their Effects on Gene Expression in Arabidopsis

(2013) Xi Wang et al.   PLoS Genetics

Will genomic selection be a practical method for plant breeding?

(2012) Akihiro Nakaya et al.   ANNALS OF BOTANY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Binding of ABI4 to a CACCG motif mediates the ABA-induced expression of the ZmSSI gene in maize (Zea mays L.) endosperm

(2012) Yu-Feng Hu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The yak genome and adaptation to life at high altitude

(2012) Qiang Qiu et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

An EST-derived SNP and SSR genetic linkage map of cassava (Manihot esculenta Crantz)

(2012) Ismail Yusuf Rabbi et al.   THEORETICAL AND APPLIED GENETICS

The Cassava Genome: Current Progress, Future Directions

(2012) Simon Prochnik et al.   Tropical Plant Biology

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

(2011) Z. Li et al.   Briefings in Functional Genomics

Sequence-based physical mapping of complex genomes by whole genome profiling

(2011) J. van Oeveren et al.   GENOME RESEARCH

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Characterization and expression profile of two UDP-glucosyltransferases, UGT85K4 and UGT85K5, catalyzing the last step in cyanogenic glucoside biosynthesis in cassava

(2011) Rubini Kannangara et al.   PLANT JOURNAL

Microsatellite Polymorphisms in Cassava Landraces from the Cerrado Biome, Mato Grosso do Sul, Brazil

(2010) M. V. B. M. Siqueira et al.   BIOCHEMICAL GENETICS

Expression Profiling of Cassava Storage Roots Reveals an Active Process of Glycolysis/GluconeogenesisF

(2010) Jun Yang et al.   Journal of Integrative Plant Biology

Draft genome sequence of the oilseed species Ricinus communis

(2010) Agnes P Chan et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Constructing a Genetic Linkage Map Using an F1 Population of Non-inbred Parents in Cassava (Manihot esculenta Crantz)

(2010) Xin Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

Biosynthesis of the Cyanogenic Glucosides Linamarin and Lotaustralin in Cassava: Isolation, Biochemical Characterization, and Expression Pattern of CYP71E7, the Oxime-Metabolizing Cytochrome P450 Enzyme

(2010) K. Jorgensen et al.   PLANT PHYSIOLOGY

Multiple distinct small RNAs originate from the same microRNA precursors

(2010) Weixiong Zhang et al.   GENOME BIOLOGY

Recent trends in global production and utilization of bio-ethanol fuel

(2009) Mustafa Balat et al.   APPLIED ENERGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

(2009) Yong Q Gu et al.   BMC GENOMICS

Glucose 1-phosphate is efficiently taken up by potato (Solanum tuberosum) tuber parenchyma cells and converted to reserve starch granules

(2009) Joerg Fettke et al.   NEW PHYTOLOGIST

Integrating sequence with FPC fingerprint maps

(2009) W. Nelson et al.   NUCLEIC ACIDS RESEARCH

Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants

(2009) Changying Zeng et al.   NUCLEIC ACIDS RESEARCH

Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire

(2009) M. F. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crop plants versus energy plants—On the international food crisis

(2008) P.M. Schmitz et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Phylogenetic patterns in the genus Manihot (Euphorbiaceae) inferred from analyses of nuclear and chloroplast DNA regions

(2008) Juliana Chacón et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Mutation of the Plastidial  -Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm

(2008) H. Satoh et al.   PLANT CELL

RD19, an Arabidopsis Cysteine Protease Required for RRS1-R-Mediated Resistance, Is Relocalized to the Nucleus by the Ralstonia solanacearum PopP2 Effector

(2008) M. Bernoux et al.   PLANT CELL

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Comparative study of SBP-box gene family in Arabidopsis and rice

(2007) Zefeng Yang et al.   GENE