Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree

Targeted enrichment strategies for next-generation plant biology

(2012) Richard Cronn et al.   AMERICAN JOURNAL OF BOTANY

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

(2011) Dai-Yong Kuang et al.   GENOME

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

(2011) GEOFFREY P. MORRIS et al.   MOLECULAR ECOLOGY

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

(2011) Tongwu Zhang et al.   Plant Methods

Assembly of large genomes using second-generation sequencing

(2010) M. C. Schatz et al.   GENOME RESEARCH

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

Chloroplast genome sequences from total DNA for plant identification

(2010) Catherine J. Nock et al.   PLANT BIOTECHNOLOGY JOURNAL

Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

(2010) Robin A Atherton et al.   Plant Methods

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

A new set of universalde novosequencing primers for extensive coverage of noncoding chloroplast DNA: new opportunities for phylogenetic studies and cpSSR discovery

(2009) DANIEL EBERT et al.   Molecular Ecology Resources

New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system

(2009) WIESŁAW BABIK et al.   Molecular Ecology Resources

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH