Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
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Title
Ultra-barcoding in cacao (Theobroma
spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
Authors
Keywords
-
Journal
AMERICAN JOURNAL OF BOTANY
Volume 99, Issue 2, Pages 320-329
Publisher
Wiley
Online
2012-02-03
DOI
10.3732/ajb.1100570
References
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Note: Only part of the references are listed.- Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification
- (2011) P. R. Steele et al. AMERICAN JOURNAL OF BOTANY
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- (2011) L. Doorduin et al. DNA RESEARCH
- and D do not replace FST
- (2011) MICHAEL C. WHITLOCK MOLECULAR ECOLOGY
- DNA barcodes for Mexican Cactaceae, plants under pressure from wild collecting
- (2011) CHRIS YESSON et al. Molecular Ecology Resources
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- (2011) Yun-Jie Zhang et al. PLoS One
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- (2010) Ilkka Kronholm et al. BMC GENETICS
- An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database)
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- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
- Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?
- (2010) Kyle G. Dexter et al. ECOLOGICAL MONOGRAPHS
- The support of meat value chains by genetic technologies
- (2010) Andrzej A. Sosnicki et al. MEAT SCIENCE
- Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
- (2010) R. K. Jansen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
- (2010) J. B. WHITTALL et al. MOLECULAR ECOLOGY
- Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome
- (2010) HANNES DEMPEWOLF et al. Molecular Ecology Resources
- Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity
- (2010) ROBERTA PIREDDA et al. Molecular Ecology Resources
- The genome of Theobroma cacao
- (2010) Xavier Argout et al. NATURE GENETICS
- Chloroplast genome sequences from total DNA for plant identification
- (2010) Catherine J. Nock et al. PLANT BIOTECHNOLOGY JOURNAL
- Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals
- (2010) Hui Yao et al. PLoS One
- Ethnobotany genomics - discovery and innovation in a new era of exploratory research
- (2010) Steven G Newmaster et al. Journal of Ethnobiology and Ethnomedicine
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Genetic diversity and geographic structure in Aglaia elaeagnoidea (Meliaceae, Sapindales), a morphologically complex tree species, near the two extremes of its distribution
- (2009) A.N. Muellner et al. BLUMEA
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
- (2009) Matthew Parks et al. BMC BIOLOGY
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach
- (2009) Gianmarco Ferri et al. INTERNATIONAL JOURNAL OF LEGAL MEDICINE
- A Grass Molecular Identification System for Forensic Botany: A Critical Evaluation of the Strengths and Limitations
- (2009) Jodie Ward et al. JOURNAL OF FORENSIC SCIENCES
- DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India
- (2009) SUBRAMANYAM RAGUPATHY et al. Molecular Ecology Resources
- DNA Barcoding-a Windfall for Tropical Biology?
- (2008) W. John Kress et al. BIOTROPICA
- jModelTest: Phylogenetic Model Averaging
- (2008) D. Posada MOLECULAR BIOLOGY AND EVOLUTION
- Botany without borders: barcoding in focus
- (2008) NOLAN C. KANE et al. MOLECULAR ECOLOGY
- Whole-genome sequencing and variant discovery in C. elegans
- (2008) LaDeana W Hillier et al. NATURE METHODS
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- (2008) Richard Cronn et al. NUCLEIC ACIDS RESEARCH
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- (2008) Juan C. Motamayor et al. PLoS One
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- (2008) Lambert A. Motilal et al. Tropical Plant Biology
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