Climate-driven mitochondrial selection: A test in Australian songbirds

Perpendicular axes of differentiation generated by mitochondrial introgression

(2017) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Integrative Approaches for Studying Mitochondrial and Nuclear Genome Co-evolution in Oxidative Phosphorylation

(2017) Paul Sunnucks et al.   Frontiers in Genetics

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Multi-locus sequence data illuminate demographic drivers of Pleistocene speciation in semi-arid southern Australian birds (Cinclosoma spp.)

(2016) Gaynor Dolman et al.   BMC EVOLUTIONARY BIOLOGY

Unpacking the mechanisms captured by a correlative species distribution model to improve predictions of climate refugia

(2016) Natalie J. Briscoe et al.   GLOBAL CHANGE BIOLOGY

Evaluating 318 continental-scale species distribution models over a 60-year prediction horizon: what factors influence the reliability of predictions?

(2016) Alejandra Morán-Ordóñez et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species

(2016) K Harrisson et al.   HEREDITY

Neutral and selective drivers of colour evolution in a widespread Australian passerine

(2016) Hernán E. Morales et al.   JOURNAL OF BIOGEOGRAPHY

The Mg2+-containing Water Cluster of Mammalian CytochromecOxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle

(2016) Naomine Yano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals

(2016) Maria Chikina et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of a Complete ATP Synthase Dimer Reveals the Molecular Basis of Inner Mitochondrial Membrane Morphology

(2016) Alexander Hahn et al.   MOLECULAR CELL

The architecture of respiratory supercomplexes

(2016) James A. Letts et al.   NATURE

The architecture of the mammalian respirasome

(2016) Jinke Gu et al.   NATURE

Structure of mammalian respiratory complex I

(2016) Jiapeng Zhu et al.   NATURE

Atomic structure of the entire mammalian mitochondrial complex I

(2016) Karol Fiedorczuk et al.   NATURE

Potentially adaptive mitochondrial haplotypes as a tool to identify divergent nuclear loci

(2016) Michael R. Garvin et al.   Methods in Ecology and Evolution

Evolutionary history of birds across southern Australia: structure, history and taxonomic implications of mitochondrial DNA diversity in an ecologically diverse suite of species

(2015) Gaynor Dolman et al.   EMU

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout ( Oncorhynchus mykiss gairdneri )

(2015) Michael R. Garvin et al.   Genome Biology and Evolution

Mitonuclear Ecology

(2015) Geoffrey E. Hill   MOLECULAR BIOLOGY AND EVOLUTION

The Effect of Selection Environment on the Probability of Parallel Evolution

(2015) Susan F. Bailey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

(2015) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Horizontal membrane-intrinsic α-helices in the stator a-subunit of an F-type ATP synthase

(2015) Matteo Allegretti et al.   NATURE

Integrating phylogeography and morphometrics to assess conservation merits and inform conservation strategies for an endangered subspecies of a common bird species

(2014) Alexandra Pavlova et al.   BIOLOGICAL CONSERVATION

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes

(2014) Han Gan et al.   BMC EVOLUTIONARY BIOLOGY

Signatures of natural selection in the mitochondrial genomes of Tachycineta swallows and their implications for latitudinal patterns of the ‘pace of life’

(2014) Maria Stager et al.   GENE

Disrupting Mitochondrial–Nuclear Coevolution Affects OXPHOS Complex I Integrity and Impacts Human Health

(2014) Moran Gershoni et al.   Genome Biology and Evolution

Polar Bears Exhibit Genome-Wide Signatures of Bioenergetic Adaptation to Life in the Arctic Environment

(2014) Andreanna J. Welch et al.   Genome Biology and Evolution

The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

(2014) José Melo-Ferreira et al.   Genome Biology and Evolution

Chronic mitochondrial uncoupling treatment prevents acute cold-induced oxidative stress in birds

(2014) Antoine Stier et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Review and meta-analysis of natural selection in mitochondrial complex I in metazoans

(2014) Michael R. Garvin et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Integrating Evolutionary and Functional Tests of Adaptive Hypotheses: A Case Study of Altitudinal Differentiation in Hemoglobin Function in an Andean Sparrow, Zonotrichia capensis

(2014) Zachary A. Cheviron et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

(2014) Yvonne L. Chan et al.   MOLECULAR BIOLOGY AND EVOLUTION

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Increased temperature variation poses a greater risk to species than climate warming

(2014) D. A. Vasseur et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Taxonomic consequences of cryptic speciation in the Golden Whistler Pachycephala pectoralis complex in mainland southern Australia

(2014) LEO JOSEPH et al.   ZOOTAXA

Australia’s arid-adapted butcherbirds experienced range expansions during Pleistocene glacial maxima

(2014) Anna M. Kearns et al.   Nature Communications

Mito-nuclear co-evolution: the positive and negative sides of functional ancient mutations

(2014) Liron Levin et al.   Frontiers in Genetics

Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome

(2013) Matthew A Lemay et al.   BMC GENOMICS

PHENOTYPIC AND GENOTYPIC CONVERGENCES ARE INFLUENCED BY HISTORICAL CONTINGENCY AND ENVIRONMENT IN YEAST

(2013) Aymé Spor et al.   EVOLUTION

MIGRATION, MITOCHONDRIA, AND THE YELLOW-RUMPED WARBLER

(2013) David P. L. Toews et al.   EVOLUTION

PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

(2013) Alexandra Pavlova et al.   EVOLUTION

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Molecular systematics of the world's most polytypic bird: thePachycephala pectoralis/melanura(Aves: Pachycephalidae) species complex

(2013) Michael J. Andersen et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Fine-scale effects of habitat loss and fragmentation despite large-scale gene flow for some regionally declining woodland bird species

(2012) Katherine A. Harrisson et al.   LANDSCAPE ECOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A species assemblage approach to comparative phylogeography of birds in southern Australia

(2012) Gaynor Dolman et al.   Ecology and Evolution

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Role of Subunit NuoL for Proton Translocation by Respiratory Complex I

(2011) Stefan Steimle et al.   BIOCHEMISTRY

Understanding mitochondrial complex I assembly in health and disease

(2011) Masakazu Mimaki et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Mitochondrial-nuclear co-evolution and its effects on OXPHOS activity and regulation

(2011) Dan Bar-Yaacov et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia

(2011) David G Chapple et al.   BMC EVOLUTIONARY BIOLOGY

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

(2011) Margaret Byrne et al.   JOURNAL OF BIOGEOGRAPHY

Structural Contribution of C-terminal Segments of NuoL (ND5) and NuoM (ND4) Subunits of Complex I fromEscherichia coli

(2011) Jesus Torres-Bacete et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon

(2011) Michael R. Garvin et al.   PLoS One

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose

(2010) G. R. Scott et al.   MOLECULAR BIOLOGY AND EVOLUTION

Weather, Not Climate, Defines Distributions of Vagile Bird Species

(2010) April E. Reside et al.   PLoS One

Mitochondrial bioenergetics as a major motive force of speciation

(2009) Moran Gershoni et al.   BIOESSAYS

Phylogeography: its development and impact in Australo-Papuan ornithology with special reference to paraphyly in Australian birds

(2009) Leo Joseph et al.   EMU

MIGRATION-SELECTION BALANCE AND LOCAL ADAPTATION OF MITOCHONDRIAL HAPLOTYPES IN RUFOUS-COLLARED SPARROWS (ZONOTRICHIA CAPENSIS) ALONG AN ELEVATIONAL GRADIENT

(2009) Zachary A. Cheviron et al.   EVOLUTION

Do mitochondrial properties explain intraspecific variation in thermal tolerance?

(2009) N. A. Fangue et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation

(2009) F. Balloux et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How mitochondria produce reactive oxygen species

(2008) Michael P. Murphy   BIOCHEMICAL JOURNAL

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

Mitochondrial phylogeographies of five widespread Eurasian bird species

(2008) Robert M. Zink et al.   JOURNAL OF ORNITHOLOGY

Evidence for multiple refugia at different time scales during Pleistocene climatic oscillations in southern Australia inferred from phylogeography

(2008) M BYRNE   QUATERNARY SCIENCE REVIEWS

The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

(2008) David Gresham et al.   PLoS Genetics