Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

(2013) Wen Huang et al.   BMC BIOINFORMATICS

RECOMMENDATIONS FOR USING MSBAYES TO INCORPORATE UNCERTAINTY IN SELECTING AN ABC MODEL PRIOR: A RESPONSE TO OAKS ET AL.

(2013) Michael J. Hickerson et al.   EVOLUTION

PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

(2013) Alexandra Pavlova et al.   EVOLUTION

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

(2013) Rasmus Heller et al.   PLoS One

Approximate Bayesian Computation

(2013) Mikael Sunnåker et al.   PLoS Computational Biology

Rethinking Community Assembly through the Lens of Coexistence Theory

(2012) J. HilleRisLambers et al.   Annual Review of Ecology Evolution and Systematics

Reconstructing Community Assembly in Time and Space Reveals Enemy Escape in a Western Palearctic Insect Community

(2012) Graham N. Stone et al.   CURRENT BIOLOGY

Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts

(2012) Dustin A. Wood et al.   DIVERSITY AND DISTRIBUTIONS

The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way?

(2012) R. PRUNIER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): A multilocus approach

(2012) A.J. McLean et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative Phylogeography in Fijian Coral Reef Fishes: A Multi-Taxa Approach towards Marine Reserve Design

(2012) Joshua A. Drew et al.   PLoS One

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

A species assemblage approach to comparative phylogeography of birds in southern Australia

(2012) Gaynor Dolman et al.   Ecology and Evolution

Phylogeography and taxonomy of the Little Bronze-Cuckoo (Chalcites minutillus) in Australia's monsoon tropics

(2011) Leo Joseph et al.   EMU

Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird?

(2011) ANNA M. KEARNS et al.   MOLECULAR ECOLOGY

Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot

(2011) KATY MORGAN et al.   MOLECULAR ECOLOGY

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Evolution of arid zone birds in Australia: Leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)

(2011) Alicia Toon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities

(2011) B. C. Emerson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Advances, challenges and a developing synthesis of ecological community assembly theory

(2011) E. Weiher et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities

(2010) Sébastien Lavergne et al.   Annual Review of Ecology Evolution and Systematics

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Climate Change and Evolutionary Adaptations at Species' Range Margins

(2010) Jane K. Hill et al.   Annual Review of Entomology

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

(2010) Jean-Marie Cornuet et al.   BMC BIOINFORMATICS

East–west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain

(2010) P.-J. Guay et al.   CONSERVATION GENETICS

A cryptic and critically endangered species revealed by mitochondrial DNA analyses: the Western Ground Parrot

(2010) Stephen A. Murphy et al.   CONSERVATION GENETICS

The impact of Pleistocene changes of climate and landscape on Australian birds: a test using the Pied Butcherbird (Cracticus nigrogularis)

(2010) Anna M. Kearns et al.   EMU

Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model

(2010) E. Bazin et al.   GENETICS

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation

(2010) KATRIINA L. ILVES et al.   MOLECULAR ECOLOGY

Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone

(2010) A. TOON et al.   MOLECULAR ECOLOGY

Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna

(2010) B. R. Barber et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach

(2009) Michael J Hickerson et al.   BMC EVOLUTIONARY BIOLOGY

Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae)

(2009) S. C. Donnellan et al.   EMU

A tangled tale of two teal: population history of the greyAnas gracilisand chestnut tealA. castaneaof Australia

(2009) Leo Joseph et al.   JOURNAL OF AVIAN BIOLOGY

Ancient mitogenomics

(2009) Simon Y.W. Ho et al.   MITOCHONDRION

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies

(2009) UMA RAMAKRISHNAN et al.   MOLECULAR ECOLOGY

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

(2009) MIGUEL NAVASCUÉS et al.   MOLECULAR ECOLOGY

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

Inferring the phylogeography and evolutionary history of the splendid fairy-wrenMalurus splendensfrom mitochondrial DNA and spectrophotometry

(2008) Anna M. Kearns et al.   JOURNAL OF AVIAN BIOLOGY

Phylogeography of post-Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists

(2008) Alexander S. Mikheyev et al.   MOLECULAR ECOLOGY

Where and when does a ring start and end? Testing the ring-species hypothesis in a species complex of Australian parrots

(2008) L. Joseph et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Marine isotope stage 3 sea level fluctuations: Data synthesis and new outlook

(2008) M. Siddall et al.   REVIEWS OF GEOPHYSICS

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION