Perpendicular axes of differentiation generated by mitochondrial introgression

The on-again, off-again relationship between mitochondrial genomes and species boundaries

(2017) Daniel B. Sloan et al.   MOLECULAR ECOLOGY

Lines in the land: a review of evidence for eastern Australia's major biogeographical barriers to closed forest taxa

(2016) Litticia M. Bryant et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Neutral and selective drivers of colour evolution in a widespread Australian passerine

(2016) Hernán E. Morales et al.   JOURNAL OF BIOGEOGRAPHY

Evolutionary implications of mitochondrial genetic variation: mitochondrial genetic effects on OXPHOS respiration and mitochondrial quantity change with age and sex in fruit flies

(2016) J. N. Wolff et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

(2016) Richard G. Harrison et al.   MOLECULAR ECOLOGY

Integrating phylogenomic and morphological data to assess candidate species-delimitation models in brown and red-bellied snakes (Storeria)

(2016) R. Alexander Pyron et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Climate change not to blame for late Quaternary megafauna extinctions in Australia

(2016) Frédérik Saltré et al.   Nature Communications

Mitonuclear coevolution as the genesis of speciation and the mitochondrial DNA barcode gap

(2016) Geoffrey E. Hill   Ecology and Evolution

Hybrid Dysfunction Expressed as Elevated Metabolic Rate in Male Ficedula Flycatchers

(2016) S. Eryn McFarlane et al.   PLoS One

Interactions between nuclear genes and a foreign mitochondrial genome in the redbelly dace Chrosomus eos

(2015) Léo Deremiens et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Single Nucleotides in the mtDNA Sequence Modify Mitochondrial Molecular Function and Are Associated with Sex-Specific Effects on Fertility and Aging

(2015) M. Florencia Camus et al.   CURRENT BIOLOGY

Gene flow betweenDrosophila yakubaandDrosophila santomeain subunit V of cytochromecoxidase: A potential case of cytonuclear cointrogression

(2015) Emily A. Beck et al.   EVOLUTION

The Sex Specific Genetic Variation of Energetics in Bank Voles, Consequences of Introgression?

(2015) Zbyszek Boratyński et al.   Evolutionary Biology

Mitonuclear Ecology

(2015) Geoffrey E. Hill   MOLECULAR BIOLOGY AND EVOLUTION

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

(2015) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Phylogenetic analysis of the Australian rosella parrots (Platycercus) reveals discordance among molecules and plumage

(2015) Ashlee Shipham et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Species- and sex-specific connectivity effects of habitat fragmentation in a suite of woodland birds

(2014) J. Nevil Amos et al.   ECOLOGY

Molecular and ecological signs of mitochondrial adaptation: consequences for introgression?

(2014) Z Boratyński et al.   HEREDITY

Speciation Continuum

(2014) K. L. Shaw et al.   JOURNAL OF HEREDITY

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Sequential adaptive introgression of the mitochondrial genome inDrosophila yakubaandDrosophila santomea

(2014) Ana Llopart et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Australia’s arid-adapted butcherbirds experienced range expansions during Pleistocene glacial maxima

(2014) Anna M. Kearns et al.   Nature Communications

Mito-nuclear co-evolution: the positive and negative sides of functional ancient mutations

(2014) Liron Levin et al.   Frontiers in Genetics

Cytonuclear Genomic Interactions and Hybrid Breakdown

(2013) Ronald S. Burton et al.   Annual Review of Ecology Evolution and Systematics

ECOLOGICAL NOVELTY BY HYBRIDIZATION: EXPERIMENTAL EVIDENCE FOR INCREASED THERMAL TOLERANCE BY TRANSGRESSIVE SEGREGATION INTIGRIOPUS CALIFORNICUS

(2013) Ricardo J. Pereira et al.   EVOLUTION

PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

(2013) Alexandra Pavlova et al.   EVOLUTION

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

The mitonuclear compatibility hypothesis of sexual selection

(2013) G. E. Hill et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fine-scale effects of habitat loss and fragmentation despite large-scale gene flow for some regionally declining woodland bird species

(2012) Katherine A. Harrisson et al.   LANDSCAPE ECOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

mmod: an R library for the calculation of population differentiation statistics

(2012) David J. Winter   Molecular Ecology Resources

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

Mitochondrial-nuclear co-evolution and its effects on OXPHOS activity and regulation

(2011) Dan Bar-Yaacov et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

(2011) Margaret Byrne et al.   JOURNAL OF BIOGEOGRAPHY

Early Pleistocene vegetation change in upland south-eastern Australia

(2011) J. M. Kale Sniderman   JOURNAL OF BIOGEOGRAPHY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Linking the mitochondrial genotype to the organismal phenotype

(2010) J. W. O. BALLARD et al.   MOLECULAR ECOLOGY

Using differential introgression in hybrid zones to identify genomic regions involved in speciation

(2010) BRET A. PAYSEUR   Molecular Ecology Resources

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Climate space, bioclimatic envelopes and coexistence methods for the reconstruction of past climates: a method using Australian beetles and significance for Quaternary reconstruction

(2010) Nick Porch   QUATERNARY SCIENCE REVIEWS

Mitochondrial bioenergetics as a major motive force of speciation

(2009) Moran Gershoni et al.   BIOESSAYS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Evolution: Replacing Genes and Traits through Hybridization

(2009) Loren H. Rieseberg   CURRENT BIOLOGY

Phylogeography: its development and impact in Australo-Papuan ornithology with special reference to paraphyly in Australian birds

(2009) Leo Joseph et al.   EMU

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative reconstruction of Early Pleistocene climate in southeastern Australia and implications for atmospheric circulation

(2009) J.M.K. Sniderman et al.   QUATERNARY SCIENCE REVIEWS

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota

(2008) M. BYRNE et al.   MOLECULAR ECOLOGY

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Evolutionary implications of non-neutral mitochondrial genetic variation

(2008) D DOWLING et al.   TRENDS IN ECOLOGY & EVOLUTION