PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

Hypotheses on rostral shield evolution in fossorial lizards derived from the phylogenetic position of a new species of Paracontias (Squamata, Scincidae)

(2011) Aurélien Miralles et al.   ORGANISMS DIVERSITY & EVOLUTION

Improving animal phylogenies with genomic data

(2011) Maximilian J. Telford et al.   TRENDS IN GENETICS

Recent Trends in Molecular Phylogenetic Analysis: Where to Next?

(2010) C. Blair et al.   JOURNAL OF HEREDITY

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

(2010) Simon Y. W. Ho et al.   Mitochondrial DNA

MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment

(2010) Minh Anh Thi Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assessment of Substitution Model Adequacy Using Frequentist and Bayesian Methods

(2010) Jennifer Ripplinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic utility of five genes for dipteran phylogeny: A test case in the Chironomidae leads to generic synonymies

(2010) Torbjørn Ekrem et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Out of the Andes: patterns of diversification in clearwing butterflies

(2009) M. ELIAS et al.   MOLECULAR ECOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic mixture models for proteins

(2008) S. Q. Le et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci

(2008) Chenhong Li et al.   SYSTEMATIC BIOLOGY