Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the GenusSymbiodinium

(2016) John E. Parkinson et al.   Genome Biology and Evolution

A Plasmodium yoelii Mei2-Like RNA Binding Protein Is Essential for Completion of Liver Stage Schizogony

(2016) Dorender A. Dankwa et al.   INFECTION AND IMMUNITY

Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances

(2016) Rachel A. Levin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The transcriptomic response of the coralAcropora digitiferato a competentSymbiodiniumstrain: the symbiosome as an arrested early phagosome

(2016) A. R. Mohamed et al.   MOLECULAR ECOLOGY

Heat Induction of Cyclic Electron Flow around Photosystem I in the Symbiotic DinoflagellateSymbiodinium

(2016) Yusuke Aihara et al.   PLANT PHYSIOLOGY

Climate change disables coral bleaching protection on the Great Barrier Reef

(2016) T. D. Ainsworth et al.   SCIENCE

Integral Light-Harvesting Complex Expression In Symbiodinium Within The Coral Acropora aspera Under Thermal Stress

(2016) Sarah L. Gierz et al.   Scientific Reports

Structural Coupling of Extrinsic Proteins with the Oxygen-Evolving Center in Photosystem II

(2016) Kentaro Ifuku et al.   Frontiers in Plant Science

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data

(2015) Peipei Li et al.   BMC BIOINFORMATICS

Transcriptomic characterization of the enzymatic antioxidants FeSOD, MnSOD, APX and KatG in the dinoflagellate genus Symbiodinium

(2015) Thomas Krueger et al.   BMC EVOLUTIONARY BIOLOGY

Intra-genomic variation in symbiotic dinoflagellates: recent divergence or recombination between lineages?

(2015) Shaun P Wilkinson et al.   BMC EVOLUTIONARY BIOLOGY

The Large Mitochondrial Genome ofSymbiodinium minutumReveals Conserved Noncoding Sequences between Dinoflagellates and Apicomplexans

(2015) Eiichi Shoguchi et al.   Genome Biology and Evolution

Symbiodiniumtranscriptome and global responses of cells to immediate changes in light intensity when grown under autotrophic or mixotrophic conditions

(2015) Tingting Xiang et al.   PLANT JOURNAL

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

Diversification of the Light-Harvesting Complex Gene Family via Intra- and Intergenic Duplications in the Coral Symbiotic Alga Symbiodinium

(2015) Shinichiro Maruyama et al.   PLoS One

Photosystem II recovery in the presence and absence of chloroplast protein repair in the symbionts of corals exposed to bleaching conditions

(2014) R. Hill et al.   CORAL REEFS

Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

(2014) Sutada Mungpakdee et al.   Genome Biology and Evolution

Unfolding the secrets of coral–algal symbiosis

(2014) Nedeljka Rosic et al.   ISME Journal

Cryptic Sex inSymbiodinium(Alveolata, Dinoflagellata) is Supported by an Inventory of Meiotic Genes

(2014) Jingyun Chi et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Antioxidant plasticity and thermal sensitivity in four types ofSymbiodiniumsp.

(2014) Thomas Krueger et al.   JOURNAL OF PHYCOLOGY

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

(2014) Daniel J. Barshis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Moderate Thermal Stress Causes Active and Immediate Expulsion of Photosynthetically Damaged Zooxanthellae (Symbiodinium) from Corals

(2014) Lisa Fujise et al.   PLoS One

A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum

(2014) Chuya Shinzato et al.   Frontiers in Microbiology

The combined effects of temperature and CO2 lead to altered gene expression in Acropora aspera

(2013) D. Ogawa et al.   CORAL REEFS

Lipid biomarkers in Symbiodinium dinoflagellates: new indicators of thermal stress

(2013) J. Kneeland et al.   CORAL REEFS

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The PsbO homolog from Symbiodinium kawagutii (Dinophyceae) characterized using biochemical and molecular methods

(2013) Raúl E. Castillo-Medina et al.   PHOTOSYNTHESIS RESEARCH

Responses to High Seawater Temperatures in Zooxanthellate Octocorals

(2013) Paul W. Sammarco et al.   PLoS One

Fatty Acid and Phospholipid Syntheses Are Prerequisites for the Cell Cycle of Symbiodinium and Their Endosymbiosis within Sea Anemones

(2013) Li-Hsueh Wang et al.   PLoS One

The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate

(2013) Adrian C. Barbrook et al.   PROTIST

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D

(2012) Jason T Ladner et al.   BMC EVOLUTIONARY BIOLOGY

Cell cycle regulation by the NEK family of protein kinases

(2012) A. M. Fry et al.   JOURNAL OF CELL SCIENCE

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Thermal Acclimation of the Symbiotic Alga Symbiodinium spp. Alleviates Photobleaching under Heat Stress

(2012) S. Takahashi et al.   PLANT PHYSIOLOGY

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

Transcriptional Response of Two Core Photosystem Genes in Symbiodinium spp. Exposed to Thermal Stress

(2012) Michael P. McGinley et al.   PLoS One

Hyperdiversity of Genes Encoding Integral Light-Harvesting Proteins in the Dinoflagellate Symbiodinium sp

(2012) Lynda Boldt et al.   PLoS One

An Analysis of Dinoflagellate Metabolism Using EST Data

(2012) Erin R. Butterfield et al.   PROTIST

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Recent progress in Symbiodinium transcriptomics

(2011) William Leggat et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Molecular functions of PsbP and PsbQ proteins in the photosystem II supercomplex

(2011) Kentaro Ifuku et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

VARIABILITY IN THE PRIMARY SITE OF PHOTOSYNTHETIC DAMAGE IN SYMBIODINIUM SP. (DINOPHYCEAE) EXPOSED TO THERMAL STRESS1

(2011) Lucy Buxton et al.   JOURNAL OF PHYCOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Protein synthesis is the primary target of reactive oxygen species in the photoinhibition of photosystem II

(2011) Yoshitaka Nishiyama et al.   PHYSIOLOGIA PLANTARUM

Assembly of the Photosynthetic Apparatus

(2011) J.-D. Rochaix   PLANT PHYSIOLOGY

Differential Responses of the Coral Host and Their Algal Symbiont to Thermal Stress

(2011) William Leggat et al.   PLoS One

Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching

(2010) Nedeljka N. Rosic et al.   CELL STRESS & CHAPERONES

Differential stability of photosynthetic membranes and fatty acid composition at elevated temperature in Symbiodinium

(2010) E. Díaz-Almeyda et al.   CORAL REEFS

The Kennedy pathway-De novo synthesis of phosphatidylethanolamine and phosphatidylcholine

(2010) Federica Gibellini et al.   IUBMB LIFE

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

(2010) Xavier Pochon et al.   JOURNAL OF PHYCOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

LOW THERMAL LIMIT OF GROWTH RATE OF SYMBIODINIUM CALIFORNIUM (DINOPHYTA) IN CULTURE MAY RESTRICT THE SYMBIONT TO SOUTHERN POPULATIONS OF ITS HOST ANEMONES (ANTHOPLEURA SPP.; ANTHOZOA, CNIDARIA)1

(2009) Brooke Baldauf McBride et al.   JOURNAL OF PHYCOLOGY

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

(2009) MK DeSalvo et al.   MARINE ECOLOGY PROGRESS SERIES

The host transcriptome remains unaltered during the establishment of coral-algal symbioses

(2009) CHRISTIAN R. VOOLSTRA et al.   MOLECULAR ECOLOGY

Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium)

(2008) Christian R. Voolstra et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Photosynthetic symbioses in animals

(2008) A.A. Venn et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The D1 and D2 proteins of dinoflagellates: unusually accumulated mutations which influence on PSII photoreaction

(2008) Satoko Iida et al.   PHOTOSYNTHESIS RESEARCH

Metabolic interactions between algal symbionts and invertebrate hosts

(2008) DAVID YELLOWLEES et al.   PLANT CELL AND ENVIRONMENT

Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium

(2008) S. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional diversity in coral-dinoflagellate symbiosis

(2008) M. Stat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA