Structural propensities of kinase family proteins from a Potts model of residue co-variation
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Title
Structural propensities of kinase family proteins from a Potts model of residue co-variation
Authors
Keywords
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Journal
PROTEIN SCIENCE
Volume 25, Issue 8, Pages 1378-1384
Publisher
Wiley
Online
2016-05-31
DOI
10.1002/pro.2954
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Note: Only part of the references are listed.- The ABC of protein kinase conformations
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- Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners
- (2014) Carlo Baldassi et al. PLoS One
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- Emerging methods in protein co-evolution
- (2013) David de Juan et al. NATURE REVIEWS GENETICS
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- (2013) Magnus Ekeberg et al. PHYSICAL REVIEW E
- Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
- (2013) Y.-L. Lin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) Y. Shan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
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- (2012) J. I. Sulkowska et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2008) M. Weigt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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