PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations?

(2010) P Di Lena et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Reducing phylogenetic bias in correlated mutation analysis

(2010) Haim Ashkenazy et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments

(2010) Lukas Burger et al.   PLoS Computational Biology

Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information

(2009) C. M. Buslje et al.   BIOINFORMATICS

Protein Sectors: Evolutionary Units of Three-Dimensional Structure

(2009) Najeeb Halabi et al.   CELL

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Using inferred residue contacts to distinguish between correct and incorrect protein models

(2008) Christopher S. Miller et al.   BIOINFORMATICS

Identification of direct residue contacts in protein-protein interaction by message passing

(2008) M. Weigt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting residue-residue contact maps by a two-layer, integrated neural-network method

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS