- Home
- Publications
- Publication Search
- Publication Details
Title
Emerging methods in protein co-evolution
Authors
Keywords
-
Journal
NATURE REVIEWS GENETICS
Volume 14, Issue 4, Pages 249-261
Publisher
Springer Nature
Online
2013-03-05
DOI
10.1038/nrg3414
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Deep architectures for protein contact map prediction
- (2012) Pietro Di Lena et al. BIOINFORMATICS
- Prioritization of pathogenic mutations in the protein kinase superfamily
- (2012) Jose MG Izarzugaza et al. BMC GENOMICS
- Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing
- (2012) Thomas A. Hopf et al. CELL
- Adaptive Mutations that Prevent Crosstalk Enable the Expansion of Paralogous Signaling Protein Families
- (2012) Emily J. Capra et al. CELL
- Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis
- (2012) T. Nugent et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tight coevolution of proliferating cell nuclear antigen (PCNA)-partner interaction networks in fungi leads to interspecies network incompatibility
- (2012) L. Zamir et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis
- (2012) A. E. Dago et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomics-aided structure prediction
- (2012) J. I. Sulkowska et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis
- (2012) James W. Fairman et al. STRUCTURE
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
- (2011) David T. Jones et al. BIOINFORMATICS
- Correlated mutations via regularized multinomial regression
- (2011) Janardanan Sreekumar et al. BMC BIOINFORMATICS
- Selection of organisms for the co-evolution-based study of protein interactions
- (2011) Dorota Herman et al. BMC BIOINFORMATICS
- Inferring viral quasispecies spectra from 454 pyrosequencing reads
- (2011) Irina Astrovskaya et al. BMC BIOINFORMATICS
- Hot Spots for Allosteric Regulation on Protein Surfaces
- (2011) Kimberly A. Reynolds et al. CELL
- Direct correlation analysis improves fold recognition
- (2011) Michael I. Sadowski et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Challenges for the prediction of macromolecular interactions
- (2011) Mark N Wass et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Protein 3D Structure Computed from Evolutionary Sequence Variation
- (2011) Debora S. Marks et al. PLoS One
- Direct-coupling analysis of residue coevolution captures native contacts across many protein families
- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Studying the co-evolution of protein families with the Mirrortree web server
- (2010) David Ochoa et al. BIOINFORMATICS
- A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees
- (2010) Hung Xuan Ta et al. BIOINFORMATICS
- Coevolution Predicts Direct Interactions between mtDNA-Encoded and nDNA-Encoded Subunits of Oxidative Phosphorylation Complex I
- (2010) Moran Gershoni et al. JOURNAL OF MOLECULAR BIOLOGY
- Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!
- (2010) Christopher A. Brown et al. PLoS One
- Evolution-guided discovery and recoding of allosteric pathway specificity determinants in psychoactive bioamine receptors
- (2010) Gustavo J. Rodriguez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein interactions and ligand binding: From protein subfamilies to functional specificity
- (2010) A. Rausell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Learning generative models for protein fold families
- (2010) Sivaraman Balakrishnan et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments
- (2010) Lukas Burger et al. PLoS Computational Biology
- The Coevolving Web of Life(American Society of Naturalists Presidential Address)
- (2009) John N. Thompson AMERICAN NATURALIST
- Combining specificity determining and conserved residues improves functional site prediction
- (2009) Olga V Kalinina et al. BMC BIOINFORMATICS
- Comparison of phylogenetic trees through alignment of embedded evolutionary distances
- (2009) Kwangbom Choi et al. BMC BIOINFORMATICS
- Protein Sectors: Evolutionary Units of Three-Dimensional Structure
- (2009) Najeeb Halabi et al. CELL
- The human protein coevolution network
- (2009) E. R.M. Tillier et al. GENOME RESEARCH
- High-resolution protein complexes from integrating genomic information with molecular simulation
- (2009) Alexander Schug et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coevolution of Interacting Fertilization Proteins
- (2009) Nathaniel L. Clark et al. PLoS Genetics
- Enhancing the prediction of protein pairings between interacting families using orthology information
- (2008) Jose MG Izarzugaza et al. BMC BIOINFORMATICS
- Protein co-evolution, co-adaptation and interactions
- (2008) Florencio Pazos et al. EMBO JOURNAL
- Predicting biological networks from genomic data
- (2008) Eoghan D. Harrington et al. FEBS LETTERS
- Co-evolution and co-adaptation in protein networks
- (2008) David Juan et al. FEBS LETTERS
- Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree
- (2008) Maricel G. Kann et al. JOURNAL OF MOLECULAR BIOLOGY
- Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method
- (2008) Lukas Burger et al. Molecular Systems Biology
- High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
- (2008) D. Juan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of direct residue contacts in protein-protein interaction by message passing
- (2008) M. Weigt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now