The Genome of the Korean Island-Originated Perilla citriodora ‘Jeju17’ Sheds Light on Its Environmental Adaptation and Fatty Acid and Lipid Production Pathways

Evaluation of dietary Perilla frutescens seed on performance and carcass quality in finishing castrated male Songliao black pigs

(2022) Ji Qiao Xia et al.   Veterinary Medicine and Science

Perilla frutescens: A Rich Source of Pharmacological Active Compounds

(2022) Tianyu Hou et al.   MOLECULES

BLISTER promotes seed maturation and fatty acid biosynthesis by interacting with WRINKLED1 to regulate chromatin dynamics in Arabidopsis

(2022) Ruihua Huang et al.   PLANT CELL

Advances in Understanding the Genetic Basis of Fatty Acids Biosynthesis in Perilla: An Update

(2022) Seon-Hwa Bae et al.   Plants-Basel

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis

(2021) Dechao Bu et al.   NUCLEIC ACIDS RESEARCH

Incipient diploidization of the medicinal plant Perilla within 10,000 years

(2021) Yujun Zhang et al.   Nature Communications

Genome-Wide Analysis of the Fatty Acid Desaturase Gene Family Reveals the Key Role of PfFAD3 in α-Linolenic Acid Biosynthesis in Perilla Seeds

(2021) Wu Duan et al.   Frontiers in Genetics

Effects of Dietary Perilla Cake Supplementation in Growing Pig on Productive Performance, Meat Quality, and Fatty Acid Profiles

(2021) Chaiwat Arjin et al.   Animals

Luteolin Attenuates Allergic Nasal Inflammation via Inhibition of Interleukin-4 in an Allergic Rhinitis Mouse Model and Peripheral Blood From Human Subjects With Allergic Rhinitis

(2020) Kai-Li Liang et al.   Frontiers in Pharmacology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

The anti‐tussive, anti‐inflammatory effects and sub‐chronic toxicological evaluation of perilla seed oil

(2020) Hui‐xing Zhang et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

(2020) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Genome-enabled discovery of anthraquinone biosynthesis in Senna tora

(2020) Sang-Ho Kang et al.   Nature Communications

Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis

(2019) Lishuan Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Effects of dietary perilla seed oil supplementation on lipid metabolism, meat quality, and fatty acid profiles in Yellow-feathered chickens

(2019) Xiaoyan Cui et al.   POULTRY SCIENCE

Perilla aldehyde attenuates CUMS-induced depressive-like behaviors via regulating TXNIP/TRX/NLRP3 pathway in rats

(2018) Yichen Song et al.   LIFE SCIENCES

Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates

(2018) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating timetrees with MEGA and the TimeTree resource

(2018) Beatriz Mello   MOLECULAR BIOLOGY AND EVOLUTION

Omega-3 fatty acid desaturase gene family from two ω-3 sources, Salvia hispanica and Perilla frutescens: Cloning, characterization and expression

(2018) Yufei Xue et al.   PLoS One

Characterization and functional analysis of a plastidial FAD6 gene and its promoter in the mesocarp of oil palm ( Elaeis guineensis )

(2018) Shousong Zhu et al.   SCIENTIA HORTICULTURAE

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

(2018) Onur Oztas et al.   Nature Communications

MUMmer4: A fast and versatile genome alignment system

(2018) Guillaume Marçais et al.   PLoS Computational Biology

Nuclear Signaling of Plant MAPKs

(2018) Jean Bigeard et al.   Frontiers in Plant Science

D-GENIES: dot plot large genomes in an interactive, efficient and simple way

(2018) Floréal Cabanettes et al.   PeerJ

A fast adaptive algorithm for computing whole-genome homology maps

(2018) Chirag Jain et al.   BIOINFORMATICS

Perilla Oil Supplementation Improves Hypertriglyceridemia and Gut Dysbiosis in Diabetic KKAy Mice

(2018) Feng Wang et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Mitogen-Activated Protein Kinase Cascades in Plant Hormone Signaling

(2018) Przemysław Jagodzik et al.   Frontiers in Plant Science

Phytochemical and phytopharmacological review of Perilla frutescens L. (Labiatae), a traditional edible-medicinal herb in China

(2017) Hua Yu et al.   FOOD AND CHEMICAL TOXICOLOGY

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assemblytics: a web analytics tool for the detection of variants from an assembly

(2016) Maria Nattestad et al.   BIOINFORMATICS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Functional identification of oleate 12-desaturase and ω-3 fatty acid desaturase genes from Perilla frutescens var. frutescens

(2016) Kyeong-Ryeol Lee et al.   PLANT CELL REPORTS

Role of Ubiquitin-Mediated Degradation System in Plant Biology

(2016) Bhaskar Sharma et al.   Frontiers in Plant Science

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Identification of hydroxy fatty acid and triacylglycerol metabolism-related genes in lesquerella through seed transcriptome analysis

(2015) Hyun Uk Kim et al.   BMC GENOMICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Anti-inflammatory effects of Perilla frutescens in activated human neutrophils through two independent pathways: Src family kinases and Calcium

(2015) Chun-Yu Chen et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

High-fat diet from perilla oil induces insulin resistance despite lower serum lipids and increases hepatic fatty acid oxidation in rats

(2014) Tao Zhang et al.   Lipids in Health and Disease

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anti-Inflammatory and Antipruritic Effects of Luteolin from Perilla (P. frutescens L.) Leaves

(2014) In Jeon et al.   MOLECULES

Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole-Genome Duplication but Different Evolutionary Fates

(2014) C. Kim et al.   PLANT CELL

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Involvement of mitogen-activated protein kinase signalling in pearl millet–downy mildew interaction

(2013) Prasad Melvin et al.   PLANT SCIENCE

The Phylogeny and Biogeographic History of Ashes (Fraxinus, Oleaceae) Highlight the Roles of Migration and Vicariance in the Diversification of Temperate Trees

(2013) Damien Daniel Hinsinger et al.   PLoS One

ExPASy: SIB bioinformatics resource portal

(2012) P. Artimo et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Effects of perilla (Perilla frutescens L.) seeds supplementation on performance, carcass characteristics, meat quality and fatty acid composition of rabbits

(2011) P.G. Peiretti et al.   Livestock Science

Modifications of the metabolic pathways of lipid and triacylglycerol production in microalgae

(2011) Wei-Luen Yu et al.   Microbial Cell Factories

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Positional Distribution of Fatty Acids in Perilla (Perilla frutescens L.) Oil

(2010) Suk Hoo Yoon et al.   JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH