Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

RNA polymerase II is released from the DNA template during transcription-coupled repair in mammalian cells

(2017) Yi-Ying Chiou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Guidelines for Genome-Scale Analysis of Biological Rhythms

(2017) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Genome-wide transcription-coupled repair inEscherichia coliis mediated by the Mfd translocase

(2017) Ogun Adebali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA-mediated repair of UV-induced DNA lesions by the DNA DAMAGE-BINDING PROTEIN 2 and ARGONAUTE 1

(2017) Catherine Schalk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture)

(2016) Aziz Sancar   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mechanisms Used by Plants to Cope with DNA Damage

(2016) Zhubing Hu et al.   Annual Review of Plant Biology

MetaCycle: an integrated R package to evaluate periodicity in large scale data

(2016) Gang Wu et al.   BIOINFORMATICS

Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA)

(2016) Ray Zhang et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Nucleotide excision repair by dual incisions in plants

(2016) Fazile Canturk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nascent RNA sequencing reveals distinct features in plant transcription

(2016) Jonathan Hetzel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager

(2016) Sabrina E. Sanchez et al.   Cold Spring Harbor Perspectives in Biology

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana

(2016) Eva-Maria Willing et al.   Nature Communications

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

(2015) Jinchuan Hu et al.   GENES & DEVELOPMENT

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator

(2013) M. L. Rugnone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Preferential Repair of the Transcribed DNA Strand in Plants

(2012) Ana Lena Fidantsef et al.   Frontiers in Plant Science

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis

(2010) Falong Lu et al.   CELL RESEARCH

Circadian clock control of the cellular response to DNA damage

(2010) Aziz Sancar et al.   FEBS LETTERS

The DDB1a interacting proteins ATCSA-1 and DDB2 are critical factors for UV-B tolerance and genomic integrity in Arabidopsis thaliana

(2010) Sascha Biedermann et al.   PLANT JOURNAL

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circadian oscillation of nucleotide excision repair in mammalian brain

(2009) Tae-Hong Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana

(2008) H. Saze et al.   SCIENCE

Regulation and Role of Arabidopsis CUL4-DDB1A-DDB2 in Maintaining Genome Integrity upon UV Stress

(2008) Jean Molinier et al.   PLoS Genetics

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY