Graph Reasoning Method Based on Affinity Identification and Representation Decoupling for Predicting lncRNA-Disease Associations

GKLOMLI: a link prediction model for inferring miRNA–lncRNA interactions by using Gaussian kernel-based method on network profile and linear optimization algorithm

(2023) Leon Wong et al.   BMC BIOINFORMATICS

Fully connected autoencoder and convolutional neural network with attention-based method for inferring disease-related lncRNAs

(2022) Ping Xuan et al.   BRIEFINGS IN BIOINFORMATICS

Learning global dependencies and multi-semantics within heterogeneous graph for predicting disease-related lncRNAs

(2022) Ping Xuan et al.   BRIEFINGS IN BIOINFORMATICS

Predicting the potential human lncRNA–miRNA interactions based on graph convolution network with conditional random field

(2022) Wenya Wang et al.   BRIEFINGS IN BIOINFORMATICS

A novel circRNA-miRNA association prediction model based on structural deep neural network embedding

(2022) Lu-Xiang Guo et al.   BRIEFINGS IN BIOINFORMATICS

SPRDA: a link prediction approach based on the structural perturbation to infer disease-associated Piwi-interacting RNAs

(2022) Kai Zheng et al.   BRIEFINGS IN BIOINFORMATICS

Semantic Meta-Path Enhanced Global and Local Topology Learning for lncRNA-Disease Association Prediction

(2022) Ping Xuan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Predicting LncRNA-Disease Association Based on Generative Adversarial Network

(2021) Biao Du et al.   CURRENT GENE THERAPY

Predicting lncRNA–miRNA interactions based on interactome network and graphlet interaction

(2021) Li Zhang et al.   GENOMICS

BiGAN: LncRNA-disease association prediction based on bidirectional generative adversarial network

(2021) Qiang Yang et al.   BMC BIOINFORMATICS

GANLDA: Graph attention network for lncRNA-disease associations prediction

(2021) Wei Lan et al.   NEUROCOMPUTING

Using Network Distance Analysis to Predict lncRNA–miRNA Interactions

(2021) Li Zhang et al.   Interdisciplinary Sciences-Computational Life Sciences

KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network

(2021) Wei Lan et al.   BRIEFINGS IN BIOINFORMATICS

Graph Triple-Attention Network for Disease-Related LncRNA Prediction

(2021) Ping Xuan et al.   IEEE Journal of Biomedical and Health Informatics

A random forest based computational model for predicting novel lncRNA-disease associations

(2020) Dengju Yao et al.   BMC BIOINFORMATICS

Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA–disease association prediction

(2020) Nan Sheng et al.   BRIEFINGS IN BIOINFORMATICS

LncRNA CDKN2B-AS1/miR-141/cyclin D network regulates tumor progression and metastasis of renal cell carcinoma

(2020) Pritha Dasgupta et al.   Cell Death & Disease

GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest

(2020) Qing-Wen Wu et al.   BRIEFINGS IN BIOINFORMATICS

Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data

(2020) Yue Gao et al.   NUCLEIC ACIDS RESEARCH

Dual Convolutional Neural Networks With Attention Mechanisms Based Method for Predicting Disease-Related lncRNA Genes

(2019) Ping Xuan et al.   Frontiers in Genetics

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-disease Association Network

(2018) pengyao ping et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

Construction of a specific SVM classifier and identification of molecular markers for lung adenocarcinoma based on lncRNA-miRNA-mRNA network

(2018) Jingming Zhao et al.   OncoTargets and Therapy

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

(2018) Wen Zhang et al.   PLoS Computational Biology

LDAP: a web server for lncRNA-disease association prediction

(2016) Wei Lan et al.   BIOINFORMATICS

Mechanisms of long noncoding RNA function in development and disease

(2016) Sandra U. Schmitz et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Integrated analysis of long non-coding RNAs and mRNA expression profiles reveals the potential role of lncRNAs in gastric cancer pathogenesis

(2014) XIAO-CONG LIN et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia

(2014) Stephan Emmrich et al.   Molecular Cancer

A bioinformatics method for predicting long noncoding RNAs associated with vascular disease

(2014) JianWei Li et al.   Science China-Life Sciences

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

HOTAIR, a prognostic factor in esophageal squamous cell carcinoma, inhibits WIF-1 expression and activates Wnt pathway

(2013) Xiao-Song Ge et al.   CANCER SCIENCE

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

Corrigendum: Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS