SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

Predicting drug-disease associations by using similarity constrained matrix factorization

(2018) Wen Zhang et al.   BMC BIOINFORMATICS

Predicting drug-disease associations and their therapeutic function based on the drug-disease association bipartite network

(2018) Wen Zhang et al.   METHODS

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

PIWIL3/OIP5-AS1/miR-367-3p/CEBPA feedback loop regulates the biological behavior of glioma cells

(2018) Xiaobai Liu et al.   Theranostics

The Bi-direction Similarity Integration Method for Predicting Microbe-disease Association

(2018) Wen Zhang et al.   IEEE Access

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information

(2017) Leyi Wei et al.   INFORMATION SCIENCES

LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

(2017) Huan Hu et al.   Molecular BioSystems

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

(2017) Yunan Luo et al.   Nature Communications

The novel targets of DL-3-n-butylphthalide predicted by similarity ensemble approach in combination with molecular docking study

(2017) Yan Wang et al.   QUANTITATIVE IMAGING IN MEDICINE AND SURGERY

Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks

(2017) Yun Xiao et al.   Scientific Reports

A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs

(2016) Dingfang Li et al.   BMC BIOINFORMATICS

Recommendations for Management of Clinically Significant Drug-Drug Interactions With Statins and Select Agents Used in Patients With Cardiovascular Disease: A Scientific Statement From the American Heart Association

(2016) Barbara S. Wiggins et al.   CIRCULATION

An Empirical Study of Features Fusion Techniques for Protein-Protein Interaction Prediction

(2016) Jiancang Zeng et al.   Current Bioinformatics

Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots

(2016) Chuan Dong et al.   Molecular BioSystems

Predicting potential side effects of drugs by recommender methods and ensemble learning

(2016) Wen Zhang et al.   NEUROCOMPUTING

LncRNAOIP5-AS1/cyranosponges RNA-binding protein HuR

(2016) Jiyoung Kim et al.   NUCLEIC ACIDS RESEARCH

Long noncoding RNAs in digestive system cancers: Functional roles, molecular mechanisms, and clinical implications (Review)

(2016) Min Fu et al.   ONCOLOGY REPORTS

Improving chemical similarity ensemble approach in target prediction

(2016) Zhonghua Wang et al.   Journal of Cheminformatics

Predicting drug side effects by multi-label learning and ensemble learning

(2015) Wen Zhang et al.   BMC BIOINFORMATICS

iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach

(2015) Bin Liu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

repRNA: a web server for generating various feature vectors of RNA sequences

(2015) Bin Liu et al.   MOLECULAR GENETICS AND GENOMICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information

(2015) V. Suresh et al.   NUCLEIC ACIDS RESEARCH

Association between Thiopurine S-methyltransferase Polymorphisms and Thiopurine-Induced Adverse Drug Reactions in Patients with Inflammatory Bowel Disease: A Meta-Analysis

(2015) Yue-Ping Liu et al.   PLoS One

DNA binding protein identification by combining pseudo amino acid composition and profile-based protein representation

(2015) Bin Liu et al.   Scientific Reports

Accurate Prediction of Immunogenic T-Cell Epitopes from Epitope Sequences Using the Genetic Algorithm-Based Ensemble Learning

(2015) Wen Zhang et al.   PLoS One

Inductive matrix completion for predicting gene-disease associations

(2014) N. Natarajan et al.   BIOINFORMATICS

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes

(2014) Sebastiaan van Heesch et al.   GENOME BIOLOGY

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses

(2013) U. Martin Singh-Blom et al.   PLoS One

Predicting linear B-cell epitopes by using sequence-derived structural and physicochemical features

(2012) Wen Zhang et al.   International Journal of Data Mining and Bioinformatics

De novo prediction of RNA–protein interactions from sequence information

(2012) Ying Wang et al.   Molecular BioSystems

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

(2012) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

Computational Prediction of Conformational B-Cell Epitopes from Antigen Primary Structures by Ensemble Learning

(2012) Wen Zhang et al.   PLoS One

Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression

(2012) Claudia Kutter et al.   PLoS Genetics

Comparing bioassay response and similarity ensemble approaches to probing protein pharmacology

(2011) Bin Chen et al.   BIOINFORMATICS

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature

(2011) Wen Zhang et al.   BMC BIOINFORMATICS

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

The Emergence of lncRNAs in Cancer Biology

(2011) J. R. Prensner et al.   Cancer Discovery

Graph Regularized Nonnegative Matrix Factorization for Data Representation

(2010) Deng Cai et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY