SPRDA: a link prediction approach based on the structural perturbation to infer disease-associated Piwi-interacting RNAs

A machine learning framework based on multi-source feature fusion for circRNA-disease association prediction

(2022) Lei Wang et al.   BRIEFINGS IN BIOINFORMATICS

A novel circRNA-miRNA association prediction model based on structural deep neural network embedding

(2022) Lu-Xiang Guo et al.   BRIEFINGS IN BIOINFORMATICS

NSECDA: Natural Semantic Enhancement for CircRNA-Disease Association Prediction

(2022) Lei Wang et al.   IEEE Journal of Biomedical and Health Informatics

SGANRDA: semi-supervised generative adversarial networks for predicting circRNA–disease associations

(2021) Lei Wang et al.   BRIEFINGS IN BIOINFORMATICS

NMFCDA: Combining randomization-based neural network with non-negative matrix factorization for predicting CircRNA-disease association

(2021) Lei Wang et al.   APPLIED SOFT COMPUTING

A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2

(2021) Xiaorui Su et al.   BRIEFINGS IN BIOINFORMATICS

Heterogeneous Networks Integration for Disease Gene Prioritization with Node Kernels

(2020) Van Dinh Tran et al.   BIOINFORMATICS

IMS-CDA: Prediction of CircRNA-Disease Associations From the Integration of Multisource Similarity Information With Deep Stacked Autoencoder Model

(2020) Lei Wang et al.   IEEE Transactions on Cybernetics

LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

(2019) Lei Wang et al.   PLoS Computational Biology

Predicting Protein-Protein Interactions from Matrix-Based Protein Sequence Using Convolution Neural Network and Feature-Selective Rotation Forest

(2019) Lei Wang et al.   Scientific Reports

MLMDA: a machine learning approach to predict and validate MicroRNA–disease associations by integrating of heterogenous information sources

(2019) Kai Zheng et al.   Journal of Translational Medicine

Prediction of potential disease-associated microRNAs using structural perturbation method

(2018) Xiangxiang Zeng et al.   BIOINFORMATICS

Mechanism of piR-DQ590027/MIR17HG regulating the permeability of glioma conditioned normal BBB

(2018) Xue Leng et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Tumor suppressive activity of PIWI-interacting RNA in human fibrosarcoma mediated through repression of RRM2

(2018) Basudeb Das et al.   MOLECULAR CARCINOGENESIS

piRBase: a comprehensive database of piRNA sequences

(2018) Jiajia Wang et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of RASSF1C piRNA target genes in lung cancer cells

(2017) Mark E. Reeves et al.   Oncotarget

Piwi-interacting RNAs in cancer: emerging functions and clinical utility

(2016) Kevin W. Ng et al.   Molecular Cancer

PiwiRNA-651 as marker of treatment response and survival in classical Hodgkin lymphoma

(2016) Anna Cordeiro et al.   Oncotarget

PIWI-Interacting RNA: Its Biogenesis and Functions

(2015) Yuka W. Iwasaki et al.   Annual Review of Biochemistry

Piwi-Interacting RNAs (piRNAs) Are Dysregulated in Renal Cell Carcinoma and Associated with Tumor Metastasis and Cancer-Specific Survival

(2015) Yuping Li et al.   MOLECULAR MEDICINE

Toward link predictability of complex networks

(2015) Linyuan Lü et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of piRNA and its potential clinical implications in cancer

(2015) Carolina Baraúna Assumpção et al.   Epigenomics

piRNAQuest: searching the piRNAome for silencers

(2014) Arijita Sarkar et al.   BMC GENOMICS

Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis

(2014) Lan-Tao Gou et al.   CELL RESEARCH

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

PIWI-interacting RNAs: from generation to transgenerational epigenetics

(2013) Maartje J. Luteijn et al.   NATURE REVIEWS GENETICS

The Immune System's Compact Genomic Counterpart

(2013) M. Leslie   SCIENCE

PIWI-interacting small RNAs: the vanguard of genome defence

(2011) Mikiko C. Siomi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Small RNAs in transcriptional gene silencing and genome defence

(2009) Danesh Moazed   NATURE

Spectral characteristics of network redundancy

(2009) Ben D. MacArthur et al.   PHYSICAL REVIEW E

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE