Fully connected autoencoder and convolutional neural network with attention-based method for inferring disease-related lncRNAs

Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA–disease association prediction

(2020) Nan Sheng et al.   BRIEFINGS IN BIOINFORMATICS

Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data

(2020) Yue Gao et al.   NUCLEIC ACIDS RESEARCH

A Probabilistic Matrix Factorization Method for Identifying lncRNA-disease Associations

(2019) Zhanwei Xuan et al.   Genes

Dual Convolutional Neural Networks With Attention Mechanisms Based Method for Predicting Disease-Related lncRNA Genes

(2019) Ping Xuan et al.   Frontiers in Genetics

LDAPred: A Method Based on Information Flow Propagation and a Convolutional Neural Network for the Prediction of Disease-Associated lncRNAs

(2019) Ping Xuan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DNILMF-LDA: Prediction of lncRNA-Disease Associations by Dual-Network Integrated Logistic Matrix Factorization and Bayesian Optimization

(2019) Yan Li et al.   Genes

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-disease Association Network

(2018) pengyao ping et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Inferring disease-associated microRNAs in heterogeneous networks with node attributes

(2018) Ping Xuan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference

(2017) Jingpu Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Global network random walk for predicting potential human lncRNA-disease associations

(2017) Changlong Gu et al.   Scientific Reports

A Computational Approach for Identifying Synergistic Drug Combinations

(2017) Kaitlyn M. Gayvert et al.   PLoS Computational Biology

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

Non-coding RNAs in Development and Disease: Background, Mechanisms, and Therapeutic Approaches

(2016) Julia Beermann et al.   PHYSIOLOGICAL REVIEWS

FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model

(2016) Xing Chen et al.   Oncotarget

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Heterogeneous Network Model to Infer Human Disease-Long Intergenic Non-Coding RNA Associations

(2015) Gamage Upeksha Ganegoda et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network

(2015) Meng Zhou et al.   Molecular BioSystems

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

Inferring novel lncRNA–disease associations based on a random walk model of a lncRNA functional similarity network

(2014) Jie Sun et al.   Molecular BioSystems

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Long non-coding RNAs: A new frontier in the study of human diseases

(2013) Xuefei Shi et al.   CANCER LETTERS

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions

(2013) Saakshi Jalali et al.   PLoS One

Identification and function of long non-coding RNA

(2013) Carl Ernst et al.   Frontiers in Cellular Neuroscience

Drug–target interaction prediction by learning from local information and neighbors

(2012) Jian-Ping Mei et al.   BIOINFORMATICS

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

The functional role of long non-coding RNA in human carcinomas

(2011) Ewan A Gibb et al.   Molecular Cancer

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Non-coding RNAs: regulators of disease

(2009) Ryan J Taft et al.   JOURNAL OF PATHOLOGY