Predicting lncRNA–miRNA interactions based on interactome network and graphlet interaction

Predicting human disease-associated circRNAs based on locality-constrained linear coding

(2019) Erxia Ge et al.   GENOMICS

Integrating Bipartite Network Projection and KATZ Measure to Identify Novel CircRNA-Disease Associations

(2019) Qi Zhao et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Predicting lncRNA–miRNA interactions based on logistic matrix factorization with neighborhood regularized

(2019) Hongsheng Liu et al.   KNOWLEDGE-BASED SYSTEMS

Integrated analysis of colorectal cancer microRNA datasets: identification of microRNAs associated with tumor development

(2018) Luca Falzone et al.   Aging-US

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction

(2018) Qi Zhao et al.   Frontiers in Genetics

The Bipartite Network Projection Recommended Algorithm for predicting long non-coding RNA–protein interactions

(2018) Qi Zhao et al.   Molecular Therapy-Nucleic Acids

GIMDA: Graphlet interaction-based MiRNA-disease association prediction

(2017) Xing Chen et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

(2017) Huan Hu et al.   Molecular BioSystems

lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs

(2017) Ya-Ru Miao et al.   NUCLEIC ACIDS RESEARCH

Knockdown of long non-coding RNA XIST exerts tumor-suppressive functions in human glioblastoma stem cells by up-regulating miR-152

(2015) Yilong Yao et al.   CANCER LETTERS

MicroRNA sequencing detects miR-424-5p up-regulation in ovarian cancer stem cells

(2015) Ji Ho Yun et al.   Genes & Genomics

Analysis of the miRNA-mRNA-lncRNA networks in ER+ and ER− breast cancer cell lines

(2015) Qian Wu et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

(2015) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

Competing endogenous RNA networks and gastric cancer

(2015) Lei-Lei Guo   WORLD JOURNAL OF GASTROENTEROLOGY

The lncRNA H19 promotes epithelial to mesenchymal transition by functioning as miRNA sponges in colorectal cancer

(2015) Wei-Cheng Liang et al.   Oncotarget

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

fMiRNA-192 and miRNA-204 Directly Suppress lncRNA HOTTIP and Interrupt GLS1-Mediated Glutaminolysis in Hepatocellular Carcinoma

(2015) Yunxia Ge et al.   PLoS Genetics

Bioinformatics Method to Predict Two Regulation Mechanism: TF–miRNA–mRNA and lncRNA–miRNA–mRNA in Pancreatic Cancer

(2014) Song Ye et al.   CELL BIOCHEMISTRY AND BIOPHYSICS

Identification of Human Disease Genes from Interactome Network Using Graphlet Interaction

(2014) Xiao-Dong Wang et al.   PLoS One

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis

(2013) Ke Liu et al.   BIOINFORMATICS

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

(2012) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer

(2011) C Braconi et al.   ONCOGENE

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Non-coding RNAs: regulators of disease

(2009) Ryan J Taft et al.   JOURNAL OF PATHOLOGY

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

(2009) Ahmad M. Khalil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetic Signatures of Noncoding RNAs

(2009) John S. Mattick   PLoS Genetics

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase

(2008) Mohammad Ali Faghihi et al.   NATURE MEDICINE