GKLOMLI: a link prediction model for inferring miRNA–lncRNA interactions by using Gaussian kernel-based method on network profile and linear optimization algorithm

EnANNDeep: An Ensemble-based lncRNA–protein Interaction Prediction Framework with Adaptive k-Nearest Neighbor Classifier and Deep Models

(2022) Lihong Peng et al.   Interdisciplinary Sciences-Computational Life Sciences

Cell–cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies

(2022) Lihong Peng et al.   BRIEFINGS IN BIOINFORMATICS

The Regulation of miR-206 on BDNF: A Motor Function Restoration Mechanism Research on Cerebral Ischemia Rats by Meridian Massage

(2022) Guofeng Shi et al.   Evidence-based Complementary and Alternative Medicine

Novel diagnostic potential of miR-1 in patients with acute heart failure

(2022) Seyyed-Reza Sadat-Ebrahimi et al.   PLoS One

VDA-RWLRLS: An anti-SARS-CoV-2 drug prioritizing framework combining an unbalanced bi-random walk and Laplacian regularized least squares

(2021) Ling Shen et al.   COMPUTERS IN BIOLOGY AND MEDICINE

miR-206 Reduces the Severity of Motor Neuron Degeneration in the Facial Nuclei of the Brainstem in a Mouse Model of SMA

(2020) Valeria Valsecchi et al.   MOLECULAR THERAPY

LDGRNMF: LncRNA-disease associations prediction based on graph regularized non-negative matrix factorization

(2020) Mei-Neng Wang et al.   NEUROCOMPUTING

Synthetic Biological Circuits within an Orthogonal Central Dogma

(2020) Alan Costello et al.   TRENDS IN BIOTECHNOLOGY

Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform

(2019) Zhan-Heng Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High Efficiency Feature Representation

(2019) Hai-Cheng Yi et al.   Molecular Therapy-Nucleic Acids

LNRLMI: Linear neighbour representation for predicting lncRNA‐miRNA interactions

(2019) Leon Wong et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Transcriptomic Analysis of mRNA-lncRNA-miRNA Interactions in Hepatocellular Carcinoma

(2019) Xia Tang et al.   Scientific Reports

DBMDA: A Unified Embedding for Sequence-Based miRNA Similarity Measure with Applications to Predict and Validate miRNA-Disease Associations

(2019) Kai Zheng et al.   Molecular Therapy-Nucleic Acids

Learning Multimodal Networks From Heterogeneous Data for Prediction of lncRNA–miRNA Interactions

(2019) Pengwei Hu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The miR-17~92 cluster activates mTORC1 in mantle cell lymphoma by targeting multiple regulators in the STK11/AMPK/TSC/mTOR pathway

(2018) Chunsun Jiang et al.   BRITISH JOURNAL OF HAEMATOLOGY

microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions

(2018) Maria D. Paraskevopoulou et al.   Nature Communications

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions

(2018) Lei Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions

(2017) Dimitra Karagkouni et al.   NUCLEIC ACIDS RESEARCH

lncRNA/MicroRNA interactions in the vasculature

(2016) MD Ballantyne et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Non-coding RNAs in Development and Disease: Background, Mechanisms, and Therapeutic Approaches

(2016) Julia Beermann et al.   PHYSIOLOGICAL REVIEWS

Bioengineering of noncoding RNAs for research agents and therapeutics

(2016) Pui Yan Ho et al.   Wiley Interdisciplinary Reviews-RNA

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

(2015) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

miRGate: a curated database of human, mouse and rat miRNA–mRNA targets

(2015) Eduardo Andrés-León et al.   Database-The Journal of Biological Databases and Curation

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs

(2014) Dongfang Wang et al.   BIOINFORMATICS

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse

(2014) Jing Gong et al.   NUCLEIC ACIDS RESEARCH

miRDB: an online resource for microRNA target prediction and functional annotations

(2014) Nathan Wong et al.   NUCLEIC ACIDS RESEARCH

Understanding functional miRNA–target interactions in vivo by site-specific genome engineering

(2014) Andrew R. Bassett et al.   Nature Communications

Non-Coding RNAs Including miRNAs and lncRNAs in Cardiovascular Biology and Disease

(2014) Masaharu Kataoka et al.   Cells

miRCancer: a microRNA-cancer association database constructed by text mining on literature

(2013) B. Xie et al.   BIOINFORMATICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Deciphering the rules of ceRNA networks

(2013) M. Cesana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactive exploration of RNA22 microRNA target predictions

(2012) Phillipe Loher et al.   BIOINFORMATICS

MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship

(2012) Amy E. Pasquinelli   NATURE REVIEWS GENETICS

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

(2012) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

Structural determinants of miRNAs for RISC loading and slicer-independent unwinding

(2009) Tomoko Kawamata et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH