High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
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Title
High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
Authors
Keywords
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Journal
Science Advances
Volume 9, Issue 10, Pages -
Publisher
American Association for the Advancement of Science (AAAS)
Online
2023-03-23
DOI
10.1126/sciadv.ade1285
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Note: Only part of the references are listed.- Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
- (2022) Matthew G. Durrant et al. NATURE BIOTECHNOLOGY
- Approaches to genetic tool development for rapid domestication of non-model microorganisms
- (2021) Lauren A. Riley et al. Biotechnology for Biofuels
- Molecular Biology in the Improvement of Biological Nitrogen Fixation by Rhizobia and Extending the Scope to Cereals
- (2021) Ravinder K. Goyal et al. Microorganisms
- Optimized gene expression from bacterial chromosome by high-throughput integration and screening
- (2021) Tatyana E. Saleski et al. Science Advances
- Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion
- (2021) Joshua R. Elmore et al. Nature Communications
- Consolidated Bioprocessing: Synthetic Biology Routes to Fuels and Fine Chemicals
- (2021) Alec Banner et al. Microorganisms
- Genome Editing in Bacteria: CRISPR-Cas and Beyond
- (2021) Ruben D. Arroyo-Olarte et al. Microorganisms
- Tandem chemical deconstruction and biological upcycling of poly(ethylene terephthalate) to β-ketoadipic acid by Pseudomonas putida KT2440
- (2021) Allison Z. Werner et al. METABOLIC ENGINEERING
- Expression of Alternative Nitrogenases in Rhodopseudomonas palustris Is Enhanced Using an Optimized Genetic Toolset for Rapid, Markerless Modifications
- (2021) Jan-Pierre du Toit et al. ACS Synthetic Biology
- Metabolic engineering for the utilization of carbohydrate portions of lignocellulosic biomass
- (2021) Jiwon Kim et al. METABOLIC ENGINEERING
- Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
- (2020) Cheng Gao et al. Nature Communications
- CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions
- (2020) Bing Wang et al. ACS Synthetic Biology
- Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria
- (2020) Eveline-Marie Lammens et al. Nature Communications
- CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering
- (2020) Phuc Leo H. Vo et al. NATURE BIOTECHNOLOGY
- Recent advances in the applications of promoter engineering for the optimization of metabolite biosynthesis
- (2019) Ning Xu et al. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY
- Synthetic biology approaches for chromosomal integration of genes and pathways in industrial microbial systems
- (2019) Lei Li et al. BIOTECHNOLOGY ADVANCES
- Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems
- (2019) Sung Sun Yim et al. Molecular Systems Biology
- Bacterial Longevity Requires Protein Synthesis and a Stringent Response
- (2019) Liang Yin et al. mBio
- CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
- (2019) Gaoyan Wang et al. Nature Microbiology
- Engineered Pseudomonas putida KT2440 co-utilizes galactose and glucose
- (2019) George L. Peabody et al. Biotechnology for Biofuels
- Thermochemical wastewater valorization via enhanced microbial toxicity tolerance
- (2018) Lahiru N. Jayakody et al. Energy & Environmental Science
- Genetic tools for reliable gene expression and recombineering in Pseudomonas putida
- (2018) Taylor B. Cook et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Metagenomic mining of regulatory elements enables programmable species-selective gene expression
- (2018) Nathan I Johns et al. NATURE METHODS
- Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria
- (2018) Ling Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Serine Integrases: Advancing Synthetic Biology
- (2018) Christine A. Merrick et al. ACS Synthetic Biology
- Integrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1
- (2018) Alvaro San Millan et al. ISME Journal
- Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria
- (2018) Vincent M Isabella et al. NATURE BIOTECHNOLOGY
- Engineered integrative and conjugative elements for efficient and inducible DNA transfer to undomesticated bacteria
- (2018) Jennifer A. N. Brophy et al. Nature Microbiology
- Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains
- (2018) Angela Pena-Gonzalez et al. mSystems
- aMSGE: advanced multiplex site-specific genome engineering with orthogonal modular recombinases in actinomycetes
- (2018) Lei Li et al. METABOLIC ENGINEERING
- Comparison and optimization of ten phage encoded serine integrases for genome engineering in Saccharomyces cerevisiae
- (2016) Zhengyao Xu et al. BMC BIOTECHNOLOGY
- Investigation of plasmid-induced growth defect in Pseudomonas putida
- (2016) Jia Mi et al. JOURNAL OF BIOTECHNOLOGY
- Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
- (2015) Yu Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Investigating the interactions between physical and biological heterogeneities in bioreactors using compartment, population balance and metabolic models
- (2015) Maxime Pigou et al. CHEMICAL ENGINEERING SCIENCE
- ePathOptimize: A Combinatorial Approach for Transcriptional Balancing of Metabolic Pathways
- (2015) J. Andrew Jones et al. Scientific Reports
- Genome engineering and gene expression control for bacterial strain development
- (2014) Chan Woo Song et al. Biotechnology Journal
- New Applications for Phage Integrases
- (2014) Paul C.M. Fogg et al. JOURNAL OF MOLECULAR BIOLOGY
- Process inhomogeneity leads to rapid side product turnover in cultivation of Corynebacterium glutamicum
- (2014) Friedrich Käß et al. Microbial Cell Factories
- Permanent genetic memory with >1-byte capacity
- (2014) Lei Yang et al. NATURE METHODS
- Characterization of 582 natural and synthetic terminators and quantification of their design constraints
- (2013) Ying-Ja Chen et al. NATURE METHODS
- A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum
- (2013) Nathan C Shaner et al. NATURE METHODS
- Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination
- (2013) Sean D. Colloms et al. NUCLEIC ACIDS RESEARCH
- The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis
- (2012) James G Thomson et al. BMC BIOTECHNOLOGY
- Novel broad host range shuttle vectors for expression in Escherichia coli, Bacillus subtilis and Pseudomonas putida
- (2012) Sonja Christina Troeschel et al. JOURNAL OF BIOTECHNOLOGY
- A phage protein that binds φC31 integrase to switch its directionality
- (2011) Thanafez Khaleel et al. MOLECULAR MICROBIOLOGY
- BglBrick vectors and datasheets: A synthetic biology platform for gene expression
- (2011) Taek Lee et al. Journal of Biological Engineering
- Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein
- (2010) Masahiro Sota et al. ISME Journal
- Serine recombinases as tools for genome engineering
- (2010) William R.A. Brown et al. METHODS
- Far-red fluorescent tags for protein imaging in living tissues
- (2009) Dmitry Shcherbo et al. BIOCHEMICAL JOURNAL
- Isolation, characterization, and utilization of a temperature-sensitive allele of a Pseudomonas replicon
- (2009) Laura A. Silo-Suh et al. JOURNAL OF MICROBIOLOGICAL METHODS
- A replication clock for Mycobacterium tuberculosis
- (2009) Wendy P Gill et al. NATURE MEDICINE
- New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes forMethanosarcinaspecies
- (2009) Adam M. Guss et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Site-specific integration ofStreptomycesΦC31 integrase-based vectors in the chromosome ofRhodococcus equi
- (2008) Yang Hong et al. FEMS MICROBIOLOGY LETTERS
- Adaptive Plasmid Evolution Results in Host-Range Expansion of a Broad-Host-Range Plasmid
- (2008) L. De Gelder et al. GENETICS
- A One Pot, One Step, Precision Cloning Method with High Throughput Capability
- (2008) Carola Engler et al. PLoS One
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