Review
Genetics & Heredity
Sheng Liu, Jian Jiao, Chang-Fu Tian
Summary: There are variations in symbiotic performance of rhizobial strains associated with the same legume host in agriculture due to polymorphisms of symbiosis genes and unexplored variations in integration efficiency of symbiotic function. Experimental evolution and reverse genetic studies suggest that horizontal gene transfer of key symbiosis genes is necessary but insufficient for bacteria to establish an effective symbiosis. Further adaptive evolution and integration of accessory genes with the core network optimize symbiotic efficiency in various ecosystems and offer insights to develop elite rhizobial inoculants.
Article
Multidisciplinary Sciences
Barney A. Geddes, Jason V. S. Kearsley, Jiarui Huang, Maryam Zamani, Zahed Muhammed, Leah Sather, Aakanx K. Panchal, George C. diCenzo, Turlough M. Finan
Summary: The symbiosis between leguminous plants and rhizobia in root nodules plays a key role in sustainable agricultural systems. Research has identified a minimal bacterial gene complement necessary for successful symbiosis and nitrogen fixation, paving the way for engineering symbiosis in nonlegume crops. By reorganizing the minimal symbiotic genes into three modules, researchers have provided a platform for expanding symbiosis to other plant partners and identifying genetic components that modulate competitiveness for nodulation and the effectiveness of rhizobia-plant symbioses.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Review
Plant Sciences
Malinda S. Thilakarathna, Kevin R. Cope
Summary: Split-root assays are widely used in studies focusing on the regulatory mechanisms in legume-rhizobia symbioses, allowing separate treatment of divided root sections to monitor local and systemic plant responses. Various techniques can be used to establish split-root assemblies, mainly used in legume studies to understand mechanisms related to root nitrogen rhizodeposition, belowground nitrogen transfer, and nodulation regulation.
JOURNAL OF EXPERIMENTAL BOTANY
(2021)
Article
Ecology
Rocky Putra, Rebecca K. Vandegeer, Shawan Karan, Jeff R. Powell, Susan E. Hartley, Scott N. Johnson
Summary: Two legume species respond differently to silicon, with significant effects on their growth and nitrogen fixation, influenced by plant genotype and symbiosis.
FUNCTIONAL ECOLOGY
(2021)
Article
Plant Sciences
Adeyemi Oladapo Aremu, Lenka Plackova, Samson Olufemi Egbewale, Karel Dolezal, Anathi Magadlela
Summary: Cytokinins play a crucial role in the developmental stages of plants and their content can be influenced by environmental factors. The study found that the concentrations of CKs in legume plants were significantly affected by the soil types and locations they were grown in.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
(2021)
Article
Microbiology
Jie Yin, Zongming Sui, Yong Li, Hongjun Yang, Ling Yuan, Jianguo Huang
Summary: The inoculation of multifunctional plant growth-promoting microbes is a simple, economic, and effective way to improve the nodulation and biological nitrogen fixation of legumes. The white-rot fungus Ceriporia lacerata HG2011 was found to release beneficial compounds and nutrients, promote root growth, and improve the availability of phosphorus and iron in the soil, resulting in enhanced nodulation and plant nitrogen fixation. Compared to native rhizobia inoculation, the fungal inoculant showed better performance in increasing nutrient availability, nodule mass, and plant biomass and grain yield.
MICROBIOLOGICAL RESEARCH
(2022)
Review
Microbiology
Asma Imran, Sughra Hakim, Mohsin Tariq, Muhammad Shoib Nawaz, Iqra Laraib, Umaira Gulzar, Muhammad Kashif Hanif, Muhammad Jawad Siddique, Mahnoor Hayat, Ahmad Fraz, Muhammad Ahmad
Summary: The excessive use of nitrogen in agriculture has had significant impacts on the environment and ecosystem, requiring global efforts to address the nitrogen-polluted planet Earth. Diazotrophic bacteria, as natural nitrogen sources for plants, have the potential to improve plant nitrogen use efficiency. The application of nanotechnology has revolutionized agriculture, and integrating slow-releasing nano-fertilizers with diazotrophs can effectively reduce nitrogen inputs, minimizing nitrogen pollution and losses.
FRONTIERS IN MICROBIOLOGY
(2021)
Review
Agronomy
Andrey Sinjushin, Elena Semenova, Margarita Vishnyakova
Summary: This paper describes the use of mutants in pea breeding in Russia, providing examples of cultivars created based on different mutations and introducing potential promising mutations currently under investigation.
Article
Biochemistry & Molecular Biology
Xiaochen Lyu, Chunyan Sun, Jin Zhang, Chang Wang, Shuhong Zhao, Chunmei Ma, Sha Li, Hongyu Li, Zhenping Gong, Chao Yan
Summary: The specific mechanisms by which nitrogen affects nodulation and nitrogen fixation in leguminous crops are still unclear. This study investigates the effects of exogenous nitrogen on proteins and metabolites in soybean root nodules. The findings reveal that exogenous nitrogen regulates multiple metabolic pathways, promotes the synthesis of signaling molecules, and inhibits energy supply for nitrogen fixation, leading to reduced root nodule growth and nitrogen fixation.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Plant Sciences
Mingkee Achom, Proyash Roy, Beatriz Lagunas, Emma Picot, Luke Richards, Roxanna Bonyadi-Pour, Alonso J. Pardal, Laura Baxter, Bethany L. Richmond, Nadine Aschauer, Eleanor M. Fletcher, Monique Rowson, Joseph Blackwell, Charlotte Rich-Griffin, Kirankumar S. Mysore, Jiangqi Wen, Sascha Ott, Isabelle A. Carre, Miriam L. Gifford
Summary: A nodule circadian clock coordinates metabolic and regulatory activity during symbiosis by involving the gene Late Elongated Hypocotyl and rhythmic expression of nodule-specific cysteine-rich peptides. The rhythmic expression of these peptides may play a vital role in temporal coordination between bacterial activity and the rhythms of the plant host.
JOURNAL OF EXPERIMENTAL BOTANY
(2022)
Article
Food Science & Technology
Canon Engoke Norris Savala, Alexander Nimo Wiredu, David Chikoye, Stephen Kyei-Boahen
Summary: Soybean production in Mozambique is increasing, but the demand for animal feed and oil is not satisfied. In order to improve yield, farmers are exploring the use of bio-inoculants. This study evaluated the performance of seven bio-inoculants from different countries and found that inoculation can improve plant growth, nodulation, and yield of soybean.
FRONTIERS IN SUSTAINABLE FOOD SYSTEMS
(2022)
Article
Plant Sciences
Lucas G. Castellani, Abril Luchetti, Juliet F. Nilsson, Julieta Perez-Gimenez, Caren Wegener, Andreas Schluter, Alfred Puhler, Antonio Lagares, Susana Brom, Mariano Pistorio, Karsten Niehaus, Gonzalo A. Torres Tejerizo
Summary: Biological nitrogen fixation is a major source of nitrogen into the biosphere, achieved through symbiosis between rhizobia and leguminous plants. Exopolysaccharides play a crucial role in establishing effective symbiosis between alfalfa and Ensifer meliloti. Rhizobium favelukesii LPU83 can infect alfalfa but lacks efficient nitrogen fixation, with different EPS biosynthesis gene organization compared to E. meliloti.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Agronomy
Loveleen Kaur Dhillon, Donna Lindsay, Tony Yang, Hossein Zakeri, Bunyamin Tar'an, J. Diane Knight, Thomas D. Warkentin
Summary: This study aims to determine the potential of 20 pea lines derived from crosses between two nodulation mutants in terms of biological nitrogen fixation (BNF) and agronomic performance. The results showed that some of the pea lines outperformed the check cultivars in terms of yield, protein percentage, and BNF capacity.
FIELD CROPS RESEARCH
(2022)
Review
Biochemistry & Molecular Biology
Clabe Wekesa, Abdul A. Jalloh, John O. Muoma, Hezekiah Korir, Keziah M. Omenge, John M. Maingi, Alexandra C. U. Furch, Ralf Oelmueller
Summary: This paper reviews the distribution, characterization, and commercialization of elite rhizobia strains in Africa, exploring their nitrogen fixation and contribution to soil fertility, as well as optimizing benefits for host plants under different soil and environmental conditions.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Plant Sciences
Fabio Steiner, Mateus Vieira Trevisan, Alan Mario Zuffo, Rafael Felippe Ratke, Jorge Gonzalez Aguilera, Milko Raul Rivera Campano, Alejandro Manuel Ecos Espino, Jose Antonio Rodriguez Garcia, Hebert Hernan Soto Gonzales
Summary: The study investigated the efficiency of inoculation with Bradyrhizobium spp. and foliar application of molybdenum (Mo) on peanut crops, and found that inoculation with Bradyrhizobium spp. and Mo application significantly improved nodulation, nitrogen uptake, and grain yield of peanut plants. However, the effect of Mo application on grain yield was only significant under specific conditions.
JOURNAL OF PLANT NUTRITION
(2023)
Article
Biochemistry & Molecular Biology
Anupama P. Halmillawewa, Marcela Restrepo-Cordoba, Benjamin J. Perry, Christopher K. Yost, Michael F. Hynes
MOLECULAR GENETICS AND GENOMICS
(2016)
Article
Biochemistry & Molecular Biology
Birgit E. Scharf, Michael F. Hynes, Gladys M. Alexandre
PLANT MOLECULAR BIOLOGY
(2016)
Article
Genetics & Heredity
Callum J. Verdonk, John T. Sullivan, Kate M. Williman, Leila Nicholson, Tahlia R. Bastholm, Michael F. Hynes, Clive W. Ronson, Charles S. Bond, Joshua P. Ramsay
Article
Microbiology
N. Dulmini Wathugala, Kasuni M. Hemananda, Cynthia B. Yip, Michael F. Hynes
Article
Biochemistry & Molecular Biology
K. M. Damitha Gunathilake, Anupama P. Halmillawewa, Keith D. MacKenzie, Benjamin J. Perry, Christopher K. Yost, Michael F. Hynes
Summary: Mesorhizobium phage vB_MloS_Cp1R7A-A1 is a novel B3 morphotype virus with a distinct prolate capsid, containing 238 predicted genes in its genome. The gene arrangement shows a partially modular organization, and the replication module may use a recombination-based mechanism similar to Enterobacteria phage T5.
CANADIAN JOURNAL OF MICROBIOLOGY
(2021)
Article
Agronomy
Meriem Gaci, Yacine Benhizia, Mohamed AbdEsselem Dems, Leyla Boukaous, Ammar Benguedouar, Michael Francis Hynes
Summary: This study aimed to investigate the diversity of indigenous rhizobia in the rhizosphere of forage peas in eastern and central Algeria. A total of 94 isolates were obtained, with most likely belonging to the Rhizobium genus. The isolates exhibited diverse plasmid profiles and restriction patterns of the cpn60 gene.
Article
Genetics & Heredity
J. Peter W. Young, Sara Moeskjaer, Alexey Afonin, Praveen Rahi, Marta Maluk, Euan K. James, Maria Izabel A. Cavassim, M. Harun-or Rashid, Aregu Amsalu Aserse, Benjamin J. Perry, En Tao Wang, Encarna Velazquez, Evgeny E. Andronov, Anastasia Tampakaki, Jose David Flores Felix, Raul Rivas Gonzalez, Sameh H. Youseif, Marc Lepetit, Stephane Boivin, Beatriz Jorrin, Gregory J. Kenicer, Alvaro Peix, Michael F. Hynes, Martha Helena Ramirez-Bahena, Arvind Gulati, Chang-Fu Tian
Summary: The study identified 18 distinct genospecies within the Rhizobium leguminosarum complex (Rlc), each separated by a distinct gap in ANI values around 96%. The 16S ribosomal RNA sequence in the Rlc is diverse but not able to distinguish between genospecies. Single genes are not reliable guides to the true phylogeny of bacterial strains within the Rlc.
Article
Multidisciplinary Sciences
Henrik Almblad, Trevor E. Randall, Fanny Liu, Katherine Leblanc, Ryan A. Groves, Weerayuth Kittichotirat, Geoffrey L. Winsor, Nicolas Fournier, Emily Au, Julie Groizeleau, Jacquelyn D. Rich, Yuefei Lou, Elise Granton, Laura K. Jennings, Larissa A. Singletary, Tara M. L. Winstone, Nathan M. Good, Roger E. Bumgarner, Michael F. Hynes, Manu Singh, Maria Silvina Stietz, Fiona S. L. Brinkman, Ayush Kumar, Ann Karen Cornelia Brassinga, Matthew R. Parsek, Boo Shan Tseng, Ian A. Lewis, Bryan G. Yipp, Justin L. MacCallum, Joe Jonathan Harrison
Summary: The study identifies an enzyme, TdcA, that modulates temperature-dependent motility, biofilm development, and virulence in Pseudomonas aeruginosa by synthesizing c-di-GMP with catalytic rates increasing more than a hundred-fold over a ten-degree Celsius change. This thermosensitive catalysis constitutes a conserved mechanism for thermal sensing in bacteria.
NATURE COMMUNICATIONS
(2021)
Article
Biochemistry & Molecular Biology
Joshua P. Ramsay, Tahlia R. Bastholm, Callum J. Verdonk, Dinah D. Tambalo, John T. Sullivan, Liam K. Harold, Beatrice A. Panganiban, Elena Colombi, Benjamin J. Perry, William Jowsey, Calum Morris, Michael F. Hynes, Charles S. Bond, Andrew D. S. Cameron, Christopher K. Yost, Clive W. Ronson
Summary: The horizontal transfer of ICEMlSym (R7A) can cause non-symbiotic Mesorhizobium spp. to become nitrogen-fixing legume symbionts. A subpopulation of Mesorhizobium japonicum R7A called R7A* is epigenetically primed for quorum sensing and horizontal transfer, maintained in laboratory culture. The epigenetic maintenance of the R7A* state requires ICEMlSym (R7A)-encoded copies of both qseC and qseC2, forming a stable epigenetic switch that controls qseM transcription and primes a subpopulation of R7A cells for quorum sensing and horizontal transfer.
NUCLEIC ACIDS RESEARCH
(2022)
Review
Biology
Grace E. Wardell, Michael F. Hynes, Peter J. Young, Ellie Harrison
Summary: Rhizobia are a significant group of bacterial symbionts that establish nitrogen-fixing intracellular infections within plant hosts. The genes involved in this symbiosis are encoded on mobile genetic elements (MGEs), suggesting the importance of horizontal gene transfer in the ecology and evolution of rhizobium-legume symbiosis.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
(2022)
Article
Microbiology
Eden S. P. Bromfield, Sylvie Cloutier, Michael F. Hynes
Summary: A novel bacterial strain T173(T) was isolated from a root-nodule of a Melilotus albus plant in Canada. It belongs to a new Ensifer lineage and shares a clade with the non-symbiotic species, Ensifer adhaerens. Genomic and taxonomic analyses confirmed the distinct placement of strain T173(T) from other named Ensifer species. The strain has a genome size of 8,094,229 bp and six replicons including a chromosome and five plasmids.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Mai Farghaly, Michael F. Hynes, Mohammad Nazari, Sylvia Checkley, Karen Liljebjelke
Summary: Integrative and conjugative elements (ICEs) are important in facilitating horizontal gene transfer and the dissemination of antimicrobial resistance between bacteria. A study identified an ICEHs02 in Histophilus somni that carries multiple antimicrobial resistance genes and can be transferred to other bacteria. The study found that tetracycline and ciprofloxacin induction significantly increased the transfer rates of ICEHs02, and the acquisition of ICEHs02 reduced the relative fitness of the host bacteria.
CANADIAN JOURNAL OF MICROBIOLOGY
(2022)
Article
Microbiology
K. M. Damitha Gunathilake, Supriya Bhat, Christopher K. Yost, Michael F. Hynes
MICROBIOLOGY RESOURCE ANNOUNCEMENTS
(2020)