Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems
Authors
Keywords
-
Journal
Molecular Systems Biology
Volume 15, Issue 8, Pages -
Publisher
EMBO
Online
2019-08-14
DOI
10.15252/msb.20198875
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Deconstructing cell-free extract preparation for in vitro activation of transcriptional genetic circuitry
- (2019) Adam Silverman et al. ACS Synthetic Biology
- Cell-free gene-regulatory network engineering with synthetic transcription factors
- (2019) Zoe Swank et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli
- (2018) Guillaume Urtecho et al. BIOCHEMISTRY
- Synthesis of (R,R)-2,3-butanediol from starch in a hybrid cell-free reaction system
- (2018) Tong Yi et al. JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY
- Rapid and Scalable Characterization of CRISPR Technologies Using an E. coli Cell-Free Transcription-Translation System
- (2018) Ryan Marshall et al. MOLECULAR CELL
- Metagenomic mining of regulatory elements enables programmable species-selective gene expression
- (2018) Nathan I Johns et al. NATURE METHODS
- Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
- (2018) Nathan M. Belliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid acquisition and model-based analysis of cell-free transcription–translation reactions from nonmodel bacteria
- (2018) Simon J. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell-free prediction of protein expression costs for growing cells
- (2018) Olivier Borkowski et al. Nature Communications
- Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors
- (2018) Ye Chen et al. Nature Communications
- Single-pot glycoprotein biosynthesis using a cell-free transcription-translation system enriched with glycosylation machinery
- (2018) Thapakorn Jaroentomeechai et al. Nature Communications
- Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids
- (2018) Rey W. Martin et al. Nature Communications
- Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli
- (2018) Guillaume Cambray et al. NATURE BIOTECHNOLOGY
- A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers
- (2018) Melissa K. Takahashi et al. Nature Communications
- Predicting Transcriptional Output of Synthetic Multi-input Promoters
- (2018) David M. Zong et al. ACS Synthetic Biology
- Establishing a Cell-Free Vibrio natriegens Expression System
- (2018) Daniel J. Wiegand et al. ACS Synthetic Biology
- Establishing a High-Yielding Cell-Free Protein Synthesis Platform Derived from Vibrio natriegens
- (2018) Benjamin J. Des Soye et al. ACS Synthetic Biology
- Measuring cis-regulatory energetics in living cells using allelic manifolds
- (2018) Talitha L Forcier et al. eLife
- Genetic circuit characterization and debugging using RNA‐seq
- (2017) Thomas E Gorochowski et al. Molecular Systems Biology
- Synthetic microbial consortia enable rapid assembly of pure translation machinery
- (2017) Fernando Villarreal et al. Nature Chemical Biology
- A reporter system coupled with high-throughput sequencing unveils key bacterial transcription and translation determinants
- (2017) Eva Yus et al. Nature Communications
- Development of a CHO-Based Cell-Free Platform for Synthesis of Active Monoclonal Antibodies
- (2017) Rey W. Martin et al. ACS Synthetic Biology
- Streptomyces venezuelae TX-TL - a next generation cell-free synthetic biology tool
- (2017) Simon J. Moore et al. Biotechnology Journal
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks
- (2017) Enoch Yeung et al. Cell Systems
- BBMerge – Accurate paired shotgun read merging via overlap
- (2017) Brian Bushnell et al. PLoS One
- Ribosome-mediated synthesis of natural product-like peptides via cell-free translation
- (2016) Rumit Maini et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Principles for designing synthetic microbial communities
- (2016) Nathan I Johns et al. CURRENT OPINION IN MICROBIOLOGY
- A cell-free framework for rapid biosynthetic pathway prototyping and enzyme discovery
- (2016) Ashty S. Karim et al. METABOLIC ENGINEERING
- Development of a Bacillus subtilis cell-free transcription-translation system for prototyping regulatory elements
- (2016) Richard Kelwick et al. METABOLIC ENGINEERING
- Synthetic biology to access and expand nature's chemical diversity
- (2016) Michael J. Smanski et al. NATURE REVIEWS MICROBIOLOGY
- The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology
- (2016) Jonathan Garamella et al. ACS Synthetic Biology
- Cell-Free Mixing of Escherichia coli Crude Extracts to Prototype and Rationally Engineer High-Titer Mevalonate Synthesis
- (2016) Quentin M. Dudley et al. ACS Synthetic Biology
- Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields
- (2015) Irina O. Vvedenskaya et al. MOLECULAR CELL
- High-throughput preparation methods of crude extract for robust cell-free protein synthesis
- (2015) Yong-Chan Kwon et al. Scientific Reports
- Rapid cell-free forward engineering of novel genetic ring oscillators
- (2015) Henrike Niederholtmeyer et al. eLife
- Cell-free metabolic engineering: Biomanufacturing beyond the cell
- (2014) Quentin M. Dudley et al. Biotechnology Journal
- Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
- (2014) Gene-Wei Li et al. CELL
- Paper-Based Synthetic Gene Networks
- (2014) Keith Pardee et al. CELL
- Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution
- (2014) Grigory S. Filonov et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria
- (2014) I. Farasat et al. Molecular Systems Biology
- Functional optimization of gene clusters by combinatorial design and assembly
- (2014) Michael J Smanski et al. NATURE BIOTECHNOLOGY
- Gene Circuit Performance Characterization and Resource Usage in a Cell-Free “Breadboard”
- (2014) Dan Siegal-Gaskins et al. ACS Synthetic Biology
- Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems
- (2014) Melissa K. Takahashi et al. ACS Synthetic Biology
- Optimized extract preparation methods and reaction conditions for improved yeast cell-free protein synthesis
- (2013) C. Eric Hodgman et al. BIOTECHNOLOGY AND BIOENGINEERING
- Design of orthogonal genetic switches based on a crosstalk map of s, anti- s, and promoters
- (2013) V. A. Rhodius et al. Molecular Systems Biology
- In vitro integration of ribosomal RNA synthesis, ribosome assembly, and translation
- (2013) M. C. Jewett et al. Molecular Systems Biology
- Genomic mining of prokaryotic repressors for orthogonal logic gates
- (2013) Brynne C Stanton et al. Nature Chemical Biology
- Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology
- (2013) James Chappell et al. NUCLEIC ACIDS RESEARCH
- Composability of regulatory sequences controlling transcription and translation inEscherichia coli
- (2013) Sriram Kosuri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Causes and Effects of N-Terminal Codon Bias in Bacterial Genes
- (2013) D. B. Goodman et al. SCIENCE
- Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
- (2012) Eilon Sharon et al. NATURE BIOTECHNOLOGY
- RNA snap ™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria
- (2012) Mark B. Stead et al. NUCLEIC ACIDS RESEARCH
- Mutational robustness of 16S ribosomal RNA, shown by experimental horizontal gene transfer in Escherichia coli
- (2012) K. Kitahara et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiplexed in Vivo His-Tagging of Enzyme Pathways for in Vitro Single-Pot Multienzyme Catalysis
- (2012) Harris H. Wang et al. ACS Synthetic Biology
- Genome Replication, Synthesis, and Assembly of the Bacteriophage T7 in a Single Cell-Free Reaction
- (2012) Jonghyeon Shin et al. ACS Synthetic Biology
- Transforming biochemical engineering with cell-free biology
- (2011) James R. Swartz AICHE JOURNAL
- Cell-free synthetic biology: Thinking outside the cell
- (2011) C. Eric Hodgman et al. METABOLIC ENGINEERING
- VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
- (2011) L. Chen et al. NUCLEIC ACIDS RESEARCH
- Development of an artificial cell, from self-organization to computation and self-reproduction
- (2011) Vincent Noireaux et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- NUPACK: Analysis and design of nucleic acid systems
- (2010) Joseph N. Zadeh et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process
- (2010) Emily M. LeProust et al. NUCLEIC ACIDS RESEARCH
- Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
- (2010) J. B. Kinney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, E
- (2010) V. A. Rhodius et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Development of high-yield autofluorescent protein microarrays using hybrid cell-free expression with combined Escherichia coli S30 and wheat germ extracts
- (2010) Xristo Zárate et al. Proteome Science
- High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis
- (2009) Rupali P Patwardhan et al. NATURE BIOTECHNOLOGY
- Automated design of synthetic ribosome binding sites to control protein expression
- (2009) Howard M Salis et al. NATURE BIOTECHNOLOGY
- Fermentative hydrogen production by the new marine Pantoea agglomerans isolated from the mangrove sludge
- (2008) D ZHU et al. INTERNATIONAL JOURNAL OF HYDROGEN ENERGY
- An integrated cell-free metabolic platform for protein production and synthetic biology
- (2008) Michael C Jewett et al. Molecular Systems Biology
- ARDB--Antibiotic Resistance Genes Database
- (2008) B. Liu et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started