Article
Green & Sustainable Science & Technology
S. Kavitha, T. Gajendran, K. Saranya, P. Selvakumar, V Manivasagan, S. Jeevitha
Summary: This study investigates the use of a consortium of cellulolytic and ethanogenic bacteria for consolidated bioprocessing of bioethanol production. The pre-treatment conditions for Allium ascalonicum leaves were optimized to achieve efficient removal of hemicellulose and recovery of cellulose. By screening and optimizing the essential medium components, the bioethanol yield was maximized.
Article
Biotechnology & Applied Microbiology
Letitia Minnaar, Riaan den Haan
Summary: This study evaluates the potential of natural and industrial strains of Saccharomyces cerevisiae to secrete cellulases. The results show that natural isolates have better secretion capacities for cellulases under high temperature and acetic acid conditions, and exhibit tolerance to various fermentation-associated stresses. These isolates could serve as promising chassis organisms for consolidated bioprocessing bioethanol production.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Review
Engineering, Environmental
Selvakumar Periyasamy, J. Beula Isabel, S. Kavitha, V. Karthik, Badr A. Mohamed, Desta Getachew Gizaw, P. Sivashanmugam, Tejraj M. Aminabhavi
Summary: With the growth of the global population, it is crucial to develop long-term technological advancements in order to meet energy demands while preserving the Earth's limited resources. Using renewable energy systems offers numerous benefits, such as stabilizing energy supply and demand, ensuring food security and economic stability, and protecting the environment from pollution. Bioethanol presents a potential alternative as a renewable and long-term energy source, but reducing production costs is critical for its long-term viability and economic competitiveness against petroleum. Converting lignocellulose to bioethanol through consolidated bioprocessing could offer a cost-effective, environmentally friendly, and efficient approach, but further research and optimization are still needed. This review explores biomass pretreatments, process enhancements, recombinant microbial catalysts and enzymes, and metabolic engineering in the context of consolidated bioprocessing, providing an overview to guide future research in lignocellulosic biomass for bioethanol production.
CHEMICAL ENGINEERING JOURNAL
(2023)
Article
Biotechnology & Applied Microbiology
Jiajia Zhao, Caihong Ma, Yaojie Mei, Jingjing Han, Chen Zhao
Summary: A system for itaconic acid synthesis from cellulose by Neurospora crassa was established, resulting in the highest yield of itaconic acid was 354.08 + 35.99 mg/L. Multi-omics analyses showed that itaconic acid synthesis reduced energy production, leading to decreases in trehalose, cell wall, fatty acids synthesis and downregulations in MAPK signaling pathway, cell cycle and meiosis. Enhancing LPMOs-cellobionic acid/gluconic acid system has the potential to reduce energy consumption of the consolidated bioprocessing.
MICROBIAL CELL FACTORIES
(2023)
Article
Engineering, Environmental
Hao Fang, Chen Zhao, Chaofeng Li, Yuqi Song, Liang Yu, Xiangyang Song, Jianping Wu, Lirong Yang
Summary: This study focused on increasing the production and simplifying the process of D-glucaric acid production from lignocellulose. It compared consolidated bioprocessing (CBP) with separated hydrolysis and fermentation (SHF), and found that CBP was advantageous in terms of yield, process simplicity, and cost reduction potential.
CHEMICAL ENGINEERING JOURNAL
(2023)
Article
Biochemical Research Methods
David Dempfle, Oliver Krocher, Michael Hans-Peter Studer
Summary: Lignocellulose-based biofuels, especially those produced through consolidated bioprocessing (CBP), offer significant cost savings potential and economic competitiveness. In the EU, CBP provides enough margin for profitable production of lignocellulosic ethanol, while in the U.S., profitable production can only be achieved through CBP combined with other cost-saving techniques.
Article
Biotechnology & Applied Microbiology
Chaofeng Li, Xiaofeng Lin, Xing Ling, Shuo Li, Hao Fang
Summary: The study successfully knocked out the opi1 gene, constructed the biosynthesis pathway of d-glucaric acid, and obtained two engineered strains, LGA-1 and LGA-C, with record-breaking titers. In lignocellulosic biorefining processes, using an artificial microbial consortium of T. reesei Rut-C30 and S. cerevisiae LGA-1 showed promising results for efficient production. Further research is needed to enhance the effectiveness of this microbial consortium for d-glucaric acid production from lignocellulose.
BIOTECHNOLOGY FOR BIOFUELS
(2021)
Article
Biotechnology & Applied Microbiology
Punnita Pamueangmun, Aliyu Dantani Abdullahi, Md. Humayun Kabir, Kridsada Unban, Apinun Kanpiengjai, Joachim Venus, Kalidas Shetty, Chalermpong Saenjum, Chartchai Khanongnuch
Summary: This study proposes the use of sustainable and economically feasible processes and renewable lignocellulose biomass as a starting raw material for second-generation lactic acid production. Weizmannia coagulans MA42, isolated from a soil sample in Chiang Mai province, Thailand, showed the highest production of L-lactic acid and lignocellulolytic enzymes compared to other isolates. The study also found that pretreating the substrates with diluted sulfuric acid and diluted sodium hydroxide improved the efficiency of L-lactic acid production.
FERMENTATION-BASEL
(2023)
Article
Energy & Fuels
Huilei Wang, Yilin Le, Jianzhong Sun
Summary: A cost effective bioconversion process was developed by combining the recycling of cadmium wastewater and the conversion of un-pretreated biomass. The process involved the biotransformation of cadmium ions into cadmium sulfide and the conversion of biomass into hydrogen through a combination of biocatalysis and photocatalysis.
Review
Biotechnology & Applied Microbiology
Dae-Hee Lee, Haseong Kim, Bong-Hyun Sung, Byung Kwan Cho, Seung-Goo Lee
Summary: Biofoundries are advanced automation facilities crucial for advancing the DBTL paradigm in biomanufacturing and synthetic biology. International collaborations among biofoundries can provide solutions to challenges and improve efficiency and standardization.
BIOTECHNOLOGY AND BIOPROCESS ENGINEERING
(2023)
Article
Biotechnology & Applied Microbiology
Yanfang Wang, Theo Elzenga, Jan Dirk van Elsas
Summary: The study found that Coniochaeta sp. 2T2.1 played a key role in the degradation of wheat straw, with the two bacteria having additional roles. Temperature had minor effects on degradation, while pH and shaking speed were key determinants of organismal growth and wheat straw degradation levels.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Article
Agricultural Engineering
Reeta Rani Singhania, Anil Kumar Patel, Anusuiya Singh, Dibyajyoti Haldar, Shveta Soam, Chiu-Wen Chen, Mei -Ling Tsai, Cheng-Di Dong
Summary: Consolidated bioprocessing (CBP) is a production method that directly produces value-added compounds from biomass, reducing inputs and chemical use. However, commercialization has been limited due to low conversion efficiency. The key challenge is developing a cost-effective CBP process with bifunctional catalysts.
BIORESOURCE TECHNOLOGY
(2022)
Review
Biotechnology & Applied Microbiology
Mengdi Wu, Yujia Jiang, Yansong Liu, Lu Mou, Wenming Zhang, Fengxue Xin, Min Jiang
Summary: Thermophilic Thermoanaerobacterium species show great potential in lignocellulosic biorefinery, with efficient lignocellulose degradation and the possibility of reducing metabolic burden through co-culture for more complex production processes.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Article
Energy & Fuels
S. Kavitha, T. Gajendran, K. Saranya, V. Manivasagan
Summary: Contemporary studies show that macroalgae biomass, specifically Sargassum wightii, rich in cellulose, can be a promising source for ethanol production. This investigation focuses on the optimization of cellulose extraction and medium components for Lachnoclostridium phytofermentans KSM 1203 for bioethanol production through consolidated bioprocessing. The alkali pretreatment and sodium hypochlorite treatment were found to effectively remove lignin and hemicelluloses, resulting in the optimal conditions for ethanol yield of 13.75 g/L.
Article
Green & Sustainable Science & Technology
Sarel J. M. Malherbe, Rosemary A. Cripwell, Lorenzo Favaro, Willem H. van Zyl, Marinda Viljoen-Bloom
Summary: Corn starch is the main feedstock for bioethanol production, but alternative cereals like triticale and sorghum grown on marginal farming land and used as animal feed have been evaluated due to concerns about food security. This study used a consolidated bio-processing approach to assess the potential of triticale and sorghum grains as bioethanol feedstocks and found that an amylolytic strain achieved high ethanol conversion efficiencies from both substrates. The study also showed that supplementation with specific enzymes can reduce fermentation time and different fermentation configurations may be required for each substrate.
Review
Biochemistry & Molecular Biology
Harshwardhan Poddar, Derren J. Heyes, Giorgio Schiro, Martin Weik, David Leys, Nigel S. Scrutton
Summary: Dynamic changes in protein structures are crucial for protein function and can be investigated with unprecedented temporal and spatial resolution using X-ray free electron lasers. Light-activated proteins are attractive targets for time-resolved structural studies, as they allow for visualization of early chemical changes and global structural changes.
Review
Biochemistry & Molecular Biology
Nicole G. H. Leferink, Nigel S. Scrutton
Summary: Terpenoids are natural products with significant industrial interest, and engineered microbes are increasingly being used to produce them. Terpene synthases play a crucial role in the structural diversity of natural terpenoids, but lack a strong sequence-function relationship, making product-outcome predictions challenging. New advances in genome mining, computational modeling, high-throughput screening, and machine-learning are expected to allow more predictive engineering of these enzymes in the future.
Article
Biochemistry & Molecular Biology
Nicole G. H. Leferink, Andres M. Escorcia, Bodi R. Ouwersloot, Linus O. Johanissen, Sam Hay, Marc W. van der Kamp, Nigel S. Scrutton
Summary: The study identified the essential roles of key residues in bacterial monoterpene synthases, particularly the importance of Phe77 and other aromatic amino acids in monoterpenoid synthesis, as well as the critical roles of Phe295 and Ala301 in different synthetic pathways.
Review
Biochemistry & Molecular Biology
Mauro A. Rinaldi, Clara A. Ferraz, Nigel S. Scrutton
Summary: This review discusses strategies to increase terpenoid titres in Escherichia coli, including altering metabolic pathways and selecting suitable heterologous homologs for E. coli expression to increase titres and product diversity.
NATURAL PRODUCT REPORTS
(2022)
Article
Chemistry, Physical
Linus O. Johannissen, Aoife Taylor, Samantha J. O. Hardman, Derren J. Heyes, Nigel S. Scrutton, Sam Hay
Summary: This article proposes a complete mechanism for the photochemistry between protochlorophyllide (PChlide) and nicotinamide adenine dinucleotide phosphate (NADPH) based on computational calculations. The mechanism is consistent with recent experimental data and explains how photoexcitation facilitates hydride transfer, with implications for biological hydride transfer reactions.
Article
Biotechnology & Applied Microbiology
Mauro A. Rinaldi, Shirley Tait, Helen S. Toogood, Nigel S. Scrutton
Summary: A key challenge in chemicals biomanufacturing is maintaining stable microbial strains for cost-effective fermentation at scale. This study demonstrates the targeted engineering of a stable Escherichia coli strain for producing linalool from paper mill waste, providing a proof-of-concept for chemicals production from low-cost feedstocks.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2022)
Article
Chemistry, Physical
Tobias M. Hedison, Andreea I. Iorgu, Donato Calabrese, Derren J. Heyes, Muralidharan Shanmugam, Nigel S. Scrutton
Summary: This study investigates the structural, dynamical, and functional relationship of copper nitrite reductases (CuNiRs) through combining crystallographic techniques and solution-state approaches. The findings shed light on the catalytic mechanisms of these enzymes and suggest the involvement of protein dynamics. The importance of integrating high-resolution crystallographic techniques and low-resolution solution-state approaches in studying metalloenzymes is emphasized.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Chemistry, Physical
Hanan L. L. Messiha, Nigel S. S. Scrutton, David Leys
Summary: Biosynthetic routes for cost-efficient, eco-friendly, and sustainable production of compounds like styrene are urgently needed. The traditional biosynthesis of styrene from L-phenylalanine via trans-cinnamate is limited by styrene toxicity. This study demonstrates that using an E. coli consortium, whole-cell cascade biotransformation can efficiently convert L-phenylalanine to styrene, avoiding the issue of styrene toxicity and the need for enzyme purification.
Article
Chemistry, Physical
Rhys D. Barker, Yuqi Yu, Leonardo De Maria, Linus O. Johannissen, Nigel S. Scrutton
Summary: In order to rationally engineer flavin-dependent halogenases (FDHs), it is important to understand the reaction mechanism and substrate interactions in the active site. This study presents the most likely mechanism for halogenation based on molecular dynamics simulations and density functional theory cluster models of FDH PrnA.
Article
Biotechnology & Applied Microbiology
Helen Park, Helen S. Toogood, Guo-Qiang Chen, Nigel S. Scrutton
Summary: The engineered strain Halomonas bluephagenesis TD1.0 was able to produce propane, bioplastic PHB, and biochemicals mandelate and hydroxymandelate in a single fermentation process. Multi-product separation was achieved, showcasing the versatility of biotechnology. This achievement further establishes H. bluephagenesis as a valuable platform for industrial biotechnology.
MICROBIAL BIOTECHNOLOGY
(2023)
Editorial Material
Biochemistry & Molecular Biology
Nigel S. S. Scrutton
Summary: The study of enzymes has a long history and continues to advance rapidly. Modern enzymology focuses on understanding the complex relationships between enzyme structures, catalytic mechanisms, and biological function. Topics of interest include the regulation of enzymes at the gene and post-translational levels, as well as how catalytic activity is influenced by interactions with small molecules, macromolecules, and the enzyme environment. Insights from enzymology research have practical applications in diagnostics, pharmaceuticals, and industrial processes. The FEBS Journal seeks to highlight the latest research and provide informative reviews to showcase the breadth and importance of contemporary molecular enzymology research.
Article
Chemistry, Physical
Magnus Speirs, Samantha J. O. Hardman, Andreea I. Iorgu, Linus O. Johannissen, Derren J. Heyes, Nigel S. Scrutton, Igor Sazanovich, Sam Hay
Summary: Recent reports have shown the use of ene-reductase flavoenzymes for non-natural photochemical reactions. These studies have focused on reduced flavoenzymes, but oxidized flavins have better light harvesting properties. In a binary complex of the oxidized ene-reductase with nonreactive nicotinamide coenzyme analogs, visible photoexcitation of flavin mononucleotide leads to electron transfer, but longer-lived excited states may be achieved through enzyme engineering and substrate choice.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2023)
Review
Chemistry, Physical
Joshua N. Whitehead, Nicole G. H. Leferink, Linus O. Johannissen, Sam Hay, Nigel S. Scrutton
Summary: This article reviews the important discoveries and advances in terpene synthase/cyclase (TS) biocatalysis, summarizes the recent literature, and explores the future prospects of TS rational design. The article highlights the catalytic motifs in TSs that control product outcome and examines the recent strategies for TS engineering, including machine learning and data-driven approaches. The ultimate goal is to achieve rational and predictive engineering of TSs for designer terpene synthases.
Article
Biochemical Research Methods
Lewis J. Kearsey, Cunyu Yan, Nicole Prandi, Helen S. Toogood, Eriko Takano, Nigel S. Scrutton
Summary: This study presents a synthetic biology platform for the sustainable production of CBGA and CBG in Escherichia coli cells. The platform utilizes the repurposing of prenyltransferase AtaPT, coupled with native enzymes of Cannabis sativa, to produce CBGA in cell lysates and CBG in whole cells. The engineered AtaPT shows enhanced kinetics towards CBGA production, offering a promising approach for the biosynthesis of well-researched and rarer cannabinoids.