- Home
- Publications
- Publication Search
- Publication Details
Title
Quantitative Single-Molecule Localization Microscopy
Authors
Keywords
-
Journal
Annual Review of Biophysics
Volume 52, Issue 1, Pages 139-160
Publisher
Annual Reviews
Online
2023-05-10
DOI
10.1146/annurev-biophys-111622-091212
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Super-Resolution Microscopy for Structural Cell Biology
- (2022) Sheng Liu et al. Annual Review of Biophysics
- Technological advances in super-resolution microscopy to study cellular processes
- (2022) Charles Bond et al. MOLECULAR CELL
- Uncovering the F-Actin-Based Nuclear Egress Mechanism of Newly Synthesized Influenza A Virus Ribonucleoprotein Complexes by Single-Particle Tracking
- (2022) Cong Yu et al. ANALYTICAL CHEMISTRY
- Absolute measurement of cellular activities using photochromic single-fluorophore biosensors and intermittent quantification
- (2022) Franziska Bierbuesse et al. Nature Communications
- A coordinate-based co-localization index to quantify and visualize spatial associations in single-molecule localization microscopy
- (2022) Jelmer Willems et al. Scientific Reports
- Nanometric axial localization of single fluorescent molecules with modulated excitation
- (2021) Pierre Jouchet et al. Nature Photonics
- MINFLUX nanometer-scale 3D imaging and microsecond-range tracking on a common fluorescence microscope
- (2021) Roman Schmidt et al. Nature Communications
- Seeing beyond the limit: a guide to choosing the right super resolution microscopy technique
- (2021) Jessica Valli et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Cega: a single particle segmentation algorithm to identify moving particles in a noisy system
- (2021) Erin M. Masucci et al. MOLECULAR BIOLOGY OF THE CELL
- Molecular-scale axial localization by repetitive optical selective exposure
- (2021) Lusheng Gu et al. NATURE METHODS
- MINSTED fluorescence localization and nanoscopy
- (2021) Michael Weber et al. Nature Photonics
- Tau forms oligomeric complexes on microtubules that are distinct from tau aggregates
- (2021) Melina Theoni Gyparaki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- 3D particle averaging and detection of macromolecular symmetry in localization microscopy
- (2021) Hamidreza Heydarian et al. Nature Communications
- Democratising deep learning for microscopy with ZeroCostDL4Mic
- (2021) Lucas von Chamier et al. Nature Communications
- Smoothness correction for better SOFI imaging
- (2021) Siewert Hugelier et al. Scientific Reports
- Three-dimensional superresolution fluorescence microscopy maps the variable molecular architecture of the nuclear pore complex
- (2021) Vilma Jimenez Sabinina et al. MOLECULAR BIOLOGY OF THE CELL
- Deep learning enables fast and dense single-molecule localization with high accuracy
- (2021) Artur Speiser et al. NATURE METHODS
- A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM
- (2021) Christopher H. Bohrer et al. NATURE METHODS
- Drift correction in localization microscopy using entropy minimization
- (2021) Jelmer Cnossen et al. OPTICS EXPRESS
- Sub-diffraction error mapping for localisation microscopy images
- (2021) Richard J. Marsh et al. Nature Communications
- Robust, fiducial-free drift correction for super-resolution imaging
- (2021) Michael J. Wester et al. Scientific Reports
- MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells
- (2020) Klaus C. Gwosch et al. NATURE METHODS
- nanoTRON: a Picasso module for MLP-based classification of super-resolution data
- (2020) Alexander Auer et al. BIOINFORMATICS
- SMAUG: Analyzing single-molecule tracks with nonparametric Bayesian statistics
- (2020) Joshua D. Karslake et al. METHODS
- Accelerating multicolor spectroscopic single-molecule localization microscopy using deep learning
- (2020) Sunil Kumar Gaire et al. Biomedical Optics Express
- nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer
- (2020) Reka Hollandi et al. Cell Systems
- Two-Parameter Mobility Assessments Discriminate Diverse Regulatory Factor Behaviors in Chromatin
- (2020) Jonathan Lerner et al. MOLECULAR CELL
- DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning
- (2020) Elias Nehme et al. NATURE METHODS
- Real-time 3D single molecule tracking
- (2020) Shangguo Hou et al. Nature Communications
- SMAP: a modular super-resolution microscopy analysis platform for SMLM data
- (2020) Jonas Ries NATURE METHODS
- Cellpose: a generalist algorithm for cellular segmentation
- (2020) Carsen Stringer et al. NATURE METHODS
- Quantifying accuracy and heterogeneity in single-molecule super-resolution microscopy
- (2020) Hesam Mazidi et al. Nature Communications
- Super resolution microscopy and deep learning identify Zika virus reorganization of the endoplasmic reticulum
- (2020) Rory K. M. Long et al. Scientific Reports
- High-throughput, high-resolution deep learning microscopy based on registration-free generative adversarial network
- (2019) Hao Zhang et al. Biomedical Optics Express
- Multicolor localization microscopy and point-spread-function engineering by deep learning
- (2019) Eran Hershko et al. OPTICS EXPRESS
- Spectrally red-shifted fluorescent fiducial markers for optimal drift correction in localization microscopy
- (2019) Alexander Balinovic et al. JOURNAL OF PHYSICS D-APPLIED PHYSICS
- Quantifying Protein Copy Number in Super-Resolution Using an Imaging-Invariant Calibration
- (2019) Francesca Cella Zanacchi et al. BIOPHYSICAL JOURNAL
- Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
- (2019) Daniel Sage et al. NATURE METHODS
- A tessellation-based colocalization analysis approach for single-molecule localization microscopy
- (2019) Florian Levet et al. Nature Communications
- Single-Particle Diffusion Characterization by Deep Learning
- (2019) Naor Granik et al. BIOPHYSICAL JOURNAL
- Towards mapping the 3D genome through high speed single-molecule tracking of functional transcription factors in single living cells
- (2019) Adam J.M. Wollman et al. METHODS
- Quantitative analysis of super-resolved structures using ASAP
- (2019) John S. H. Danial et al. NATURE METHODS
- Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM
- (2019) Elke De Zitter et al. NATURE METHODS
- Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo
- (2019) Jason Otterstrom et al. NUCLEIC ACIDS RESEARCH
- Fourier ring correlation simplifies image restoration in fluorescence microscopy
- (2019) Sami Koho et al. Nature Communications
- Molecular resolution imaging by repetitive optical selective exposure
- (2019) Lusheng Gu et al. NATURE METHODS
- FRET as a biomolecular research tool — understanding its potential while avoiding pitfalls
- (2019) W. Russ Algar et al. NATURE METHODS
- Nuclear pores as versatile reference standards for quantitative superresolution microscopy
- (2019) Jervis Vermal Thevathasan et al. NATURE METHODS
- Parameter-free image resolution estimation based on decorrelation analysis
- (2019) A. Descloux et al. NATURE METHODS
- Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum
- (2019) Marloes Arts et al. Scientific Reports
- Localization microscopy at doubled precision with patterned illumination
- (2019) Jelmer Cnossen et al. NATURE METHODS
- Accurate and rapid background estimation in single-molecule localization microscopy using the deep neural network BGnet
- (2019) Leonhard Möckl et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SOFIevaluator: a strategy for the quantitative quality assessment of SOFI data
- (2019) Benjamien Moeyaert et al. Biomedical Optics Express
- Active and inactive β1 integrins segregate into distinct nanoclusters in focal adhesions
- (2018) Matthias Spiess et al. JOURNAL OF CELL BIOLOGY
- Nanoscale Spatiotemporal Diffusion Modes Measured by Simultaneous Confocal and Stimulated Emission Depletion Nanoscopy Imaging
- (2018) Falk Schneider et al. NANO LETTERS
- Deep learning massively accelerates super-resolution localization microscopy
- (2018) Wei Ouyang et al. NATURE BIOTECHNOLOGY
- Quantitative mapping and minimization of super-resolution optical imaging artifacts
- (2018) Siân Culley et al. NATURE METHODS
- STED super-resolved microscopy
- (2018) Giuseppe Vicidomini et al. NATURE METHODS
- Correlation analysis framework for localization-based superresolution microscopy
- (2018) Joerg Schnitzbauer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics
- (2018) Thibault Lagache et al. Nature Communications
- Systematic Nanoscale Analysis of Endocytosis Links Efficient Vesicle Formation to Patterned Actin Nucleation
- (2018) Markus Mund et al. CELL
- Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy
- (2018) Chawin Ounkomol et al. NATURE METHODS
- Template-free 2D particle fusion in localization microscopy
- (2018) Hamidreza Heydarian et al. NATURE METHODS
- Multicolor single-particle reconstruction of protein complexes
- (2018) Christian Sieben et al. NATURE METHODS
- In vivo measurement of afferent activity with axon-specific calcium imaging
- (2018) Gerard Joey Broussard et al. NATURE NEUROSCIENCE
- Visualizing and discovering cellular structures with super-resolution microscopy
- (2018) Yaron M. Sigal et al. SCIENCE
- Quantitative fibre analysis of single-molecule localization microscopy data
- (2018) Ruby Peters et al. Scientific Reports
- Membrane Lipid Nanodomains
- (2018) Marek Cebecauer et al. CHEMICAL REVIEWS
- Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks
- (2018) Eric C. Greenwald et al. CHEMICAL REVIEWS
- Development of 2-colour and 3D SMLM data analysis methods for fibrous spatial point patterns
- (2018) R Peters et al. JOURNAL OF PHYSICS D-APPLIED PHYSICS
- Fast, in vivo voltage imaging using a red fluorescent indicator
- (2018) Madhuvanthi Kannan et al. NATURE METHODS
- Content-aware image restoration: pushing the limits of fluorescence microscopy
- (2018) Martin Weigert et al. NATURE METHODS
- Deep learning enables cross-modality super-resolution in fluorescence microscopy
- (2018) Hongda Wang et al. NATURE METHODS
- Supramolecular Protein Assemblies Based on DNA Templates
- (2017) Chunxi Hou et al. Journal of Physical Chemistry Letters
- TrackMate: An open and extensible platform for single-particle tracking
- (2017) Jean-Yves Tinevez et al. METHODS
- Super-resolution microscopy with DNA-PAINT
- (2017) Joerg Schnitzbauer et al. Nature Protocols
- SRpHi ratiometric pH biosensors for super-resolution microscopy
- (2017) Douglas S. Richardson et al. Nature Communications
- 3D Bayesian cluster analysis of super-resolution data reveals LAT recruitment to the T cell synapse
- (2017) Juliette Griffié et al. Scientific Reports
- TestSTORM: Versatile simulator software for multimodal super-resolution localization fluorescence microscopy
- (2017) Tibor Novák et al. Scientific Reports
- Correcting for photodestruction in super-resolution optical fluctuation imaging
- (2017) Yves Peeters et al. Scientific Reports
- SharpViSu: integrated analysis and segmentation of super-resolution microscopy data
- (2016) Leonid Andronov et al. BIOINFORMATICS
- Clus-DoC: a combined cluster detection and colocalization analysis for single-molecule localization microscopy data
- (2016) Sophie V. Pageon et al. MOLECULAR BIOLOGY OF THE CELL
- Quantitative super-resolution imaging with qPAINT
- (2016) Ralf Jungmann et al. NATURE METHODS
- Varying label density allows artifact-free analysis of membrane-protein nanoclusters
- (2016) Florian Baumgart et al. NATURE METHODS
- SuReSim: simulating localization microscopy experiments from ground truth models
- (2016) Varun Venkataramani et al. NATURE METHODS
- A Bayesian cluster analysis method for single-molecule localization microscopy data
- (2016) Juliette Griffié et al. Nature Protocols
- Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes
- (2016) Francisco Balzarotti et al. SCIENCE
- Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ
- (2016) Marcel Müller et al. Nature Communications
- ClusterViSu, a method for clustering of protein complexes by Voronoi tessellation in super-resolution microscopy
- (2016) Leonid Andronov et al. Scientific Reports
- SOFI Simulation Tool: A Software Package for Simulating and Testing Super-Resolution Optical Fluctuation Imaging
- (2016) Arik Girsault et al. PLoS One
- Extracting quantitative information from single-molecule super-resolution imaging data with LAMA – LocAlization Microscopy Analyzer
- (2016) Sebastian Malkusch et al. Scientific Reports
- A Set of Homo-Oligomeric Standards Allows Accurate Protein Counting
- (2015) Kieran Finan et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Fast Optimized Cluster Algorithm for Localizations (FOCAL): a spatial cluster analysis for super-resolved microscopy
- (2015) A. Mazouchi et al. BIOINFORMATICS
- In situ structural analysis of the human nuclear pore complex
- (2015) Alexander von Appen et al. NATURE
- SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data
- (2015) Florian Levet et al. NATURE METHODS
- InferenceMAP: mapping of single-molecule dynamics with Bayesian inference
- (2015) Mohamed El Beheiry et al. NATURE METHODS
- Quantitative evaluation of software packages for single-molecule localization microscopy
- (2015) Daniel Sage et al. NATURE METHODS
- Real-time adaptive drift correction for super-resolution localization microscopy
- (2015) Ginni Grover et al. OPTICS EXPRESS
- Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid
- (2015) Mathew Stracy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A review of progress in single particle tracking: from methods to biophysical insights
- (2015) Carlo Manzo et al. REPORTS ON PROGRESS IN PHYSICS
- High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor
- (2015) Y. Gong et al. SCIENCE
- Labeling of active neural circuits in vivo with designed calcium integrators
- (2015) B. F. Fosque et al. SCIENCE
- Presynaptic nanodomains: a tale of two synapses
- (2015) Lu-Yang Wang et al. Frontiers in Cellular Neuroscience
- Steady-state cross-correlations for live two-colour super-resolution localization data sets
- (2015) Matthew B. Stone et al. Nature Communications
- Resolution improvement by 3D particle averaging in localization microscopy
- (2015) Jordi Broeken et al. Methods and Applications in Fluorescence
- ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging
- (2014) Martin Ovesný et al. BIOINFORMATICS
- Mapping the Energy and Diffusion Landscapes of Membrane Proteins at the Cell Surface Using High-Density Single-Molecule Imaging and Bayesian Inference: Application to the Multiscale Dynamics of Glycine Receptors in the Neuronal Membrane
- (2014) Jean-Baptiste Masson et al. BIOPHYSICAL JOURNAL
- Progress in quantitative single-molecule localization microscopy
- (2014) H. Deschout et al. HISTOCHEMISTRY AND CELL BIOLOGY
- Method for co-cluster analysis in multichannel single-molecule localisation data
- (2014) Jérémie Rossy et al. HISTOCHEMISTRY AND CELL BIOLOGY
- Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT
- (2014) Ralf Jungmann et al. NATURE METHODS
- Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate
- (2014) Nela Durisic et al. NATURE METHODS
- DNA origami–based standards for quantitative fluorescence microscopy
- (2014) Jürgen J Schmied et al. Nature Protocols
- Stochastic approach to the molecular counting problem in superresolution microscopy
- (2014) Geoffrey C. Rollins et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantitative super-resolution imaging of Bruchpilot distinguishes active zone states
- (2014) Nadine Ehmann et al. Nature Communications
- The fidelity of stochastic single-molecule super-resolution reconstructions critically depends upon robust background estimation
- (2014) Eelco Hoogendoorn et al. Scientific Reports
- A lipid bound actin meshwork organizes liquid phase separation in model membranes
- (2014) Alf Honigmann et al. eLife
- Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus
- (2014) Ignacio Izeddin et al. eLife
- Multiple Hypothesis Tracking for Cluttered Biological Image Sequences
- (2013) N. Chenouard et al. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE
- Extracting intracellular diffusive states and transition rates from single-molecule tracking data
- (2013) Fredrik Persson et al. NATURE METHODS
- Measuring image resolution in optical nanoscopy
- (2013) Robert P J Nieuwenhuizen et al. NATURE METHODS
- Quantifying spatial organization in point-localization superresolution images using pair correlation analysis
- (2013) Prabuddha Sengupta et al. Nature Protocols
- Nuclear Pore Scaffold Structure Analyzed by Super-Resolution Microscopy and Particle Averaging
- (2013) A. Szymborska et al. SCIENCE
- Active Remodeling of Cortical Actin Regulates Spatiotemporal Organization of Cell Surface Molecules
- (2012) Kripa Gowrishankar et al. CELL
- Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution
- (2012) A. Loschberger et al. JOURNAL OF CELL SCIENCE
- Stoichiometry of the Human Glycine Receptor Revealed by Direct Subunit Counting
- (2012) N. Durisic et al. JOURNAL OF NEUROSCIENCE
- Icy: an open bioimage informatics platform for extended reproducible research
- (2012) Fabrice de Chaumont et al. NATURE METHODS
- pHTomato, a red, genetically encoded indicator that enables multiplex interrogation of synaptic activity
- (2012) Yulong Li et al. NATURE NEUROSCIENCE
- Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy
- (2012) James E. Fitzgerald et al. PHYSICAL REVIEW LETTERS
- Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting
- (2012) Sarah L. Veatch et al. PLoS One
- Accurate Construction of Photoactivated Localization Microscopy (PALM) Images for Quantitative Measurements
- (2012) Carla Coltharp et al. PLoS One
- Fluorescence Correlation Spectroscopy: Past, Present, Future
- (2011) Elliot L. Elson BIOPHYSICAL JOURNAL
- Coordinate-based colocalization analysis of single-molecule localization microscopy data
- (2011) Sebastian Malkusch et al. HISTOCHEMISTRY AND CELL BIOLOGY
- The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy
- (2011) Hendrik Deschout et al. Journal of Biophotonics
- Identification of clustering artifacts in photoactivated localization microscopy
- (2011) Paolo Annibale et al. NATURE METHODS
- Sample drift correction in 3D fluorescence photoactivation localization microscopy
- (2011) Michael J. Mlodzianoski et al. OPTICS EXPRESS
- Quantitative Photo Activated Localization Microscopy: Unraveling the Effects of Photoblinking
- (2011) Paolo Annibale et al. PLoS One
- Superresolution Imaging of Chemical Synapses in the Brain
- (2010) Adish Dani et al. NEURON
- Performance limits on three-dimensional particle localization in photon-limited microscopy
- (2010) Ginni Grover et al. OPTICS LETTERS
- Restriction of Receptor Movement Alters Cellular Response: Physical Force Sensing by EphA2
- (2010) K. Salaita et al. SCIENCE
- Accurate Determination of Membrane Dynamics with Line-Scan FCS
- (2009) Jonas Ries et al. BIOPHYSICAL JOURNAL
- On the Use of Ripley's K-Function and Its Derivatives to Analyze Domain Size
- (2009) Maria A. Kiskowski et al. BIOPHYSICAL JOURNAL
- The T-cell-receptor signaling network
- (2009) M. Huse JOURNAL OF CELL SCIENCE
- TCR and Lat are expressed on separate protein islands on T cell membranes and concatenate during activation
- (2009) Björn F Lillemeier et al. NATURE IMMUNOLOGY
- Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function
- (2009) S. R. P. Pavani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Signal initiation in T-cell receptor microclusters
- (2008) Maria-Cristina Seminario et al. IMMUNOLOGICAL REVIEWS
- Actin restricts FcɛRI diffusion and facilitates antigen-induced receptor immobilization
- (2008) Nicholas L. Andrews et al. NATURE CELL BIOLOGY
- Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes
- (2008) Arnauld Sergé et al. NATURE METHODS
- Spherical nanosized focal spot unravels the interior of cells
- (2008) Roman Schmidt et al. NATURE METHODS
- Robust single-particle tracking in live-cell time-lapse sequences
- (2008) Khuloud Jaqaman et al. NATURE METHODS
- Single-particle tracking: connecting the dots
- (2008) Michael J Saxton NATURE METHODS
- High-density mapping of single-molecule trajectories with photoactivated localization microscopy
- (2008) Suliana Manley et al. NATURE METHODS
- Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy
- (2008) B. Huang et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now