Accelerating multicolor spectroscopic single-molecule localization microscopy using deep learning

Deep learning in single-molecule microscopy: fundamentals, caveats, and recent developments [Invited]

(2020) Leonhard Möckl et al.   Biomedical Optics Express

Multicolor super-resolution imaging using spectroscopic single-molecule localization microscopy with optimal spectral dispersion

(2019) Yang Zhang et al.   APPLIED OPTICS

Information-rich localization microscopy through machine learning

(2019) Taehwan Kim et al.   Nature Communications

Three-dimensional biplane spectroscopic single-molecule localization microscopy

(2019) Ki-Hee Song et al.   Optica

Machine-learning based spectral classification for spectroscopic single-molecule localization microscopy

(2019) Zheyuan Zhang et al.   OPTICS LETTERS

Spectroscopic analysis beyond the diffraction limit

(2018) Biqin Dong et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Deep learning massively accelerates super-resolution localization microscopy

(2018) Wei Ouyang et al.   NATURE BIOTECHNOLOGY

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Three-dimensional localization microscopy using deep learning

(2018) P. Zelger et al.   OPTICS EXPRESS

Theoretical analysis of spectral precision in spectroscopic single-molecule localization microscopy

(2018) A. Ki-Hee Song et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Blind sparse inpainting reveals cytoskeletal filaments with sub-Nyquist localization

(2017) Yanhua Wang et al.   Optica

Deep learning microscopy

(2017) Yair Rivenson et al.   Optica

Super-resolution spectroscopic microscopy via photon localization

(2016) Biqin Dong et al.   Nature Communications

Multi-dimensional super-resolution imaging enables surface hydrophobicity mapping

(2016) Marie N. Bongiovanni et al.   Nature Communications

Super-Resolution Imaging of Molecular Emission Spectra and Single Molecule Spectral Fluctuations

(2016) Michael J. Mlodzianoski et al.   PLoS One

Deep learning

(2015) Yann LeCun et al.   NATURE

Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy

(2015) Zhengyang Zhang et al.   NATURE METHODS

ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging

(2014) Martin Ovesný et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

Direct stochastic optical reconstruction microscopy with standard fluorescent probes

(2011) Sebastian van de Linde et al.   Nature Protocols