Progress in quantitative single-molecule localization microscopy

Super-resolution imaging with stochastic single-molecule localization: Concepts, technical developments, and biological applications

(2014) Anna Oddone et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Fluorophore localization algorithms for super-resolution microscopy

(2014) Alex Small et al.   NATURE METHODS

Precisely and accurately localizing single emitters in fluorescence microscopy

(2014) Hendrik Deschout et al.   NATURE METHODS

Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate

(2014) Nela Durisic et al.   NATURE METHODS

Single Protein Molecule Detection by Glass Nanopores

(2013) Wenhong Li et al.   ACS Nano

Enlightening G-protein-coupled receptors on the plasma membrane using super-resolution photoactivated localization microscopy

(2013) Marco Scarselli et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Quantitative Analysis of Three-Dimensional Fluorescence Localization Microscopy Data

(2013) Dylan M. Owen et al.   BIOPHYSICAL JOURNAL

Multiscale Spatial Organization of RNA Polymerase in Escherichia coli

(2013) Ulrike Endesfelder et al.   BIOPHYSICAL JOURNAL

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis

(2013) Arun Shivanandan et al.   BMC BIOINFORMATICS

Analysis of Point Based Image Registration Errors With Applications in Single Molecule Microscopy

(2013) E. A. K. Cohen et al.   IEEE TRANSACTIONS ON SIGNAL PROCESSING

Fourier ring correlation as a resolution criterion for super-resolution microscopy

(2013) Niccolò Banterle et al.   JOURNAL OF STRUCTURAL BIOLOGY

Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines

(2013) A. Ori et al.   Molecular Systems Biology

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

(2013) Fredrik Persson et al.   NATURE METHODS

Measuring image resolution in optical nanoscopy

(2013) Robert P J Nieuwenhuizen et al.   NATURE METHODS

Ultrahigh-resolution imaging reveals formation of neuronal SNARE/Munc18 complexes in situ

(2013) A. Pertsinidis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear Pore Scaffold Structure Analyzed by Super-Resolution Microscopy and Particle Averaging

(2013) A. Szymborska et al.   SCIENCE

Bleed-through correction for rendering and correlation analysis in multi-colour localization microscopy

(2013) Dahan Kim et al.   Journal of Optics

Optical Nanoscopy: From Acquisition to Analysis

(2012) Travis J. Gould et al.   Annual Review of Biomedical Engineering

Reversible photoswitching in fluorescent proteins: A mechanistic view

(2012) Dominique Bourgeois et al.   IUBMB LIFE

Cell Type-specific β2-Adrenergic Receptor Clusters Identified Using Photoactivated Localization Microscopy Are Not Lipid Raft Related, but Depend on Actin Cytoskeleton Integrity

(2012) Marco Scarselli et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Super-resolution Imaging Reveals the Internal Architecture of Nano-sized Syntaxin Clusters

(2012) Dana Bar-On et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution

(2012) A. Loschberger et al.   JOURNAL OF CELL SCIENCE

Stoichiometry of the Human Glycine Receptor Revealed by Direct Subunit Counting

(2012) N. Durisic et al.   JOURNAL OF NEUROSCIENCE

Resolving multi-molecular protein interactions by photoactivated localization microscopy

(2012) Eilon Sherman et al.   METHODS

Quantitative Super-Resolution Imaging Reveals Protein Stoichiometry and Nanoscale Morphology of Assembling HIV-Gag Virions

(2012) Julia Gunzenhäuser et al.   NANO LETTERS

Conformational states of the kinase Lck regulate clustering in early T cell signaling

(2012) Jérémie Rossy et al.   NATURE IMMUNOLOGY

Single-cell systems biology by super-resolution imaging and combinatorial labeling

(2012) Eric Lubeck et al.   NATURE METHODS

Drift estimation for single marker switching based imaging schemes

(2012) Claudia Geisler et al.   OPTICS EXPRESS

Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting

(2012) Sarah L. Veatch et al.   PLoS One

mMaple: A Photoconvertible Fluorescent Protein for Use in Multiple Imaging Modalities

(2012) Ann L. McEvoy et al.   PLoS One

Plasticity of the asialoglycoprotein receptor deciphered by ensemble FRET imaging and single-molecule counting PALM imaging

(2012) M. Renz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Superresolution imaging of HIV in infected cells with FlAsH-PALM

(2012) M. Lelek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM)

(2012) S.-H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative single-molecule microscopy reveals that CENP-ACnp1 deposition occurs during G2 in fission yeast

(2012) D. Lando et al.   Open Biology

A practical guide to evaluating colocalization in biological microscopy

(2011) Kenneth W. Dunn et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells

(2011) Mudalige S. Gunewardene et al.   BIOPHYSICAL JOURNAL

Multicolor Super-Resolution Fluorescence Imaging via Multi-Parameter Fluorophore Detection

(2011) Mark Bates et al.   CHEMPHYSCHEM

Coordinate-based colocalization analysis of single-molecule localization microscopy data

(2011) Sebastian Malkusch et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Functional Nanoscale Organization of Signaling Molecules Downstream of the T Cell Antigen Receptor

(2011) Eilon Sherman et al.   IMMUNITY

Pre-existing clusters of the adaptor Lat do not participate in early T cell signaling events

(2011) David J Williamson et al.   NATURE IMMUNOLOGY

Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis

(2011) Prabuddha Sengupta et al.   NATURE METHODS

Identification of clustering artifacts in photoactivated localization microscopy

(2011) Paolo Annibale et al.   NATURE METHODS

Sample drift correction in 3D fluorescence photoactivation localization microscopy

(2011) Michael J. Mlodzianoski et al.   OPTICS EXPRESS

4D Super-Resolution Microscopy with Conventional Fluorophores and Single Wavelength Excitation in Optically Thick Cells and Tissues

(2011) David Baddeley et al.   PLoS One

Quantitative Multicolor Super-Resolution Microscopy Reveals Tetherin HIV-1 Interaction

(2011) Martin Lehmann et al.   PLoS Pathogens

Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images

(2010) Jo A Helmuth et al.   BMC BIOINFORMATICS

PALM imaging and cluster analysis of protein heterogeneity at the cell surface

(2010) Dylan M. Owen et al.   Journal of Biophotonics

Photoactivatable Fluorescent Protein mEos2 Displays Repeated Photoactivation after a Long-Lived Dark State in the Red Photoconverted Form

(2010) P. Annibale et al.   Journal of Physical Chemistry Letters

Subnanometre single-molecule localization, registration and distance measurements

(2010) Alexandros Pertsinidis et al.   NATURE

Membrane molecules mobile even after chemical fixation

(2010) Kenji A K Tanaka et al.   NATURE METHODS

Optimized localization analysis for single-molecule tracking and super-resolution microscopy

(2010) Kim I Mortensen et al.   NATURE METHODS

Membrane Protein Clusters at Nanoscale Resolution: More Than Pretty Pictures

(2010) Thorsten Lang et al.   PHYSIOLOGY

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

TCR and Lat are expressed on separate protein islands on T cell membranes and concatenate during activation

(2009) Björn F Lillemeier et al.   NATURE IMMUNOLOGY

Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy

(2009) Derek Greenfield et al.   PLOS BIOLOGY

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

High-density mapping of single-molecule trajectories with photoactivated localization microscopy

(2008) Suliana Manley et al.   NATURE METHODS