DNA origami–based standards for quantitative fluorescence microscopy

Coaligned Dual-Channel STED Nanoscopy and Molecular Diffusion Analysis at 20 nm Resolution

(2013) Fabian Göttfert et al.   BIOPHYSICAL JOURNAL

DNA Origami Nanopillars as Standards for Three-Dimensional Superresolution Microscopy

(2013) Jürgen J. Schmied et al.   NANO LETTERS

ViSP: representing single-particle localizations in three dimensions

(2013) Mohamed El Beheiry et al.   NATURE METHODS

Measuring image resolution in optical nanoscopy

(2013) Robert P J Nieuwenhuizen et al.   NATURE METHODS

Video-rate nanoscopy using sCMOS camera–specific single-molecule localization algorithms

(2013) Fang Huang et al.   NATURE METHODS

DNA nanotubes for NMR structure determination of membrane proteins

(2013) Gaëtan Bellot et al.   Nature Protocols

Nuclear Pore Scaffold Structure Analyzed by Super-Resolution Microscopy and Particle Averaging

(2013) A. Szymborska et al.   SCIENCE

Counting Fluorescent Dye Molecules on DNA Origami by Means of Photon Statistics

(2013) Anton Kurz et al.   Small

DNA Origami Directed Large-Scale Fabrication of Nanostructures Resembling Room Temperature Single-Electron Transistors

(2013) Zhong Chen et al.   Small

Functional DNA Nanostructures for Photonic and Biomedical Applications

(2013) Zhen-Gang Wang et al.   Small

DNA Origami with Double-Stranded DNA As a Unified Scaffold

(2012) Yang Yang et al.   ACS Nano

Live-Cell Super-Resolution Imaging with Synthetic Fluorophores

(2012) Sebastian van de Linde et al.   Annual Review of Physical Chemistry

Folding super-sized DNA origami with scaffold strands from long-range PCR

(2012) Honglu Zhang et al.   CHEMICAL COMMUNICATIONS

Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution

(2012) A. Loschberger et al.   JOURNAL OF CELL SCIENCE

Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA

(2012) Chenxiang Lin et al.   Nature Chemistry

Fluorescence and super-resolution standards based on DNA origami

(2012) Jürgen J Schmied et al.   NATURE METHODS

rapidSTORM: accurate, fast open-source software for localization microscopy

(2012) Steve Wolter et al.   NATURE METHODS

DNA origami as biocompatible surface to match single-molecule and ensemble experiments

(2012) Andreas Gietl et al.   NUCLEIC ACIDS RESEARCH

Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy

(2012) James E. Fitzgerald et al.   PHYSICAL REVIEW LETTERS

Cryo-EM structure of a 3D DNA-origami object

(2012) X.-c. Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Actin, Spectrin, and Associated Proteins Form a Periodic Cytoskeletal Structure in Axons

(2012) K. Xu et al.   SCIENCE

Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature

(2012) J.-P. J. Sobczak et al.   SCIENCE

Maturation-Dependent HIV-1 Surface Protein Redistribution Revealed by Fluorescence Nanoscopy

(2012) J. Chojnacki et al.   SCIENCE

Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures

(2012) M. Langecker et al.   SCIENCE

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas

(2012) G. P. Acuna et al.   SCIENCE

Tug-of-War in Motor Protein Ensembles Revealed with a Programmable DNA Origami Scaffold

(2012) N. D. Derr et al.   SCIENCE

Single-Molecule Analysis Using DNA Origami

(2011) Arivazhagan Rajendran et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

DNA origami: a quantum leap for self-assembly of complex structures

(2011) Thomas Tørring et al.   CHEMICAL SOCIETY REVIEWS

Single-Molecule FRET Ruler Based on Rigid DNA Origami Blocks

(2011) Ingo H. Stein et al.   CHEMPHYSCHEM

Photophysical Properties of Atto655 Dye in the Presence of Guanosine and Tryptophan in Aqueous Solution

(2011) Ruixue Zhu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Photo-Cross-Linking-Assisted Thermal Stability of DNA Origami Structures and Its Application for Higher-Temperature Self-Assembly

(2011) Arivazhagan Rajendran et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Effect of DNA Hairpin Loops on the Twist of Planar DNA Origami Tiles

(2011) Zhe Li et al.   LANGMUIR

Organizing DNA Origami Tiles into Larger Structures Using Preformed Scaffold Frames

(2011) Zhao Zhao et al.   NANO LETTERS

Direct Mechanical Measurements Reveal the Material Properties of Three-Dimensional DNA Origami

(2011) Dominik J. Kauert et al.   NANO LETTERS

Stability of DNA Origami Nanoarrays in Cell Lysate

(2011) Qian Mei et al.   NANO LETTERS

Three-dimensional sub-100 nm super-resolution imaging of biological samples using a phase ramp in the objective pupil

(2011) David Baddeley et al.   Nano Research

Programmable molecular recognition based on the geometry of DNA nanostructures

(2011) Sungwook Woo et al.   Nature Chemistry

A primer to scaffolded DNA origami

(2011) Carlos Ernesto Castro et al.   NATURE METHODS

Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes

(2011) Andrew G York et al.   NATURE METHODS

Sharper low-power STED nanoscopy by time gating

(2011) Giuseppe Vicidomini et al.   NATURE METHODS

DAOSTORM: an algorithm for high- density super-resolution microscopy

(2011) Seamus J Holden et al.   NATURE METHODS

Challenges and opportunities for structural DNA nanotechnology

(2011) Andre V. Pinheiro et al.   Nature Nanotechnology

Direct stochastic optical reconstruction microscopy with standard fluorescent probes

(2011) Sebastian van de Linde et al.   Nature Protocols

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures

(2011) Do-Nyun Kim et al.   NUCLEIC ACIDS RESEARCH

DNA Origami-Templated Growth of Arbitrarily Shaped Metal Nanoparticles

(2011) Robert Schreiber et al.   Small

Crystalline Two-Dimensional DNA-Origami Arrays

(2010) Wenyan Liu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

Make them Blink: Probes for Super-Resolution Microscopy

(2010) Jan Vogelsang et al.   CHEMPHYSCHEM

3D Patterning at the Nanoscale of Fluorescent Emitters in Glass

(2010) Matthieu Bellec et al.   Journal of Physical Chemistry C

Fast, single-molecule localization that achieves theoretically minimum uncertainty

(2010) Carlas S Smith et al.   NATURE METHODS

QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ

(2010) Ricardo Henriques et al.   NATURE METHODS

Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function

(2010) M. A. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy

(2009) Christian Steinhauer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Super-Resolution Fluorescence Microscopy

(2009) Bo Huang et al.   Annual Review of Biochemistry

Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules

(2009) Sören Doose et al.   CHEMPHYSCHEM

NTA Directed Protein Nanopatterning on DNA Origami Nanoconstructs

(2009) Wanqiu Shen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Folding DNA Origami from a Double-Stranded Source of Scaffold

(2009) Björn Högberg et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy

(2009) Thorben Cordes et al.   NANO LETTERS

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Placement and orientation of individual DNA shapes on lithographically patterned surfaces

(2009) Ryan J. Kershner et al.   Nature Nanotechnology

Imaging biological structures with fluorescence photoactivation localization microscopy

(2009) Travis J Gould et al.   Nature Protocols

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI)

(2009) T. Dertinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure

(2009) G. Shtengel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function

(2009) S. R. P. Pavani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes

(2008) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Super-resolution microscopy by nanoscale localization of photo-switchable fluorescent probes

(2008) Mark Bates et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Isothermal Assembly of DNA Origami Structures Using Denaturing Agents

(2008) Ralf Jungmann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Superresolution Microscopy on the Basis of Engineered Dark States

(2008) Christian Steinhauer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Three-Dimensional Nanoscopy of Colloidal Crystals

(2008) Benjamin Harke et al.   NANO LETTERS

Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics

(2008) Hari Shroff et al.   NATURE METHODS

Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples

(2008) Manuel F Juette et al.   NATURE METHODS

Fluorescence nanoscopy by ground-state depletion and single-molecule return

(2008) Jonas Fölling et al.   NATURE METHODS

Stimulated emission depletion (STED) nanoscopy of a fluorescent protein-labeled organelle inside a living cell

(2008) B. Hein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy

(2008) B. Huang et al.   SCIENCE