A Bayesian cluster analysis method for single-molecule localization microscopy data

Cooperative Clustering Digitizes Biochemical Signaling and Enhances its Fidelity

(2016) Edward Roob et al.   BIOPHYSICAL JOURNAL

Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer

(2016) Darius Vasco Köster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multitarget super-resolution microscopy with high-density labeling by exchangeable probes

(2015) Tai Kiuchi et al.   NATURE METHODS

SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data

(2015) Florian Levet et al.   NATURE METHODS

Bayesian cluster identification in single-molecule localization microscopy data

(2015) Patrick Rubin-Delanchy et al.   NATURE METHODS

Quantitative evaluation of software packages for single-molecule localization microscopy

(2015) Daniel Sage et al.   NATURE METHODS

Correlated confocal and super-resolution imaging by VividSTORM

(2015) László Barna et al.   Nature Protocols

Steady-state cross-correlations for live two-colour super-resolution localization data sets

(2015) Matthew B. Stone et al.   Nature Communications

MIiSR: Molecular Interactions in Super-Resolution Imaging Enables the Analysis of Protein Interactions, Dynamics and Formation of Multi-protein Structures

(2015) Fabiana A. Caetano et al.   PLoS Computational Biology

ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging

(2014) Martin Ovesný et al.   BIOINFORMATICS

Method for co-cluster analysis in multichannel single-molecule localisation data

(2014) Jérémie Rossy et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Nanoclustering as a dominant feature of plasma membrane organization

(2014) M. F. Garcia-Parajo et al.   JOURNAL OF CELL SCIENCE

Cell-specific STORM super-resolution imaging reveals nanoscale organization of cannabinoid signaling

(2014) Barna Dudok et al.   NATURE NEUROSCIENCE

Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging

(2014) S. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

H-Ras forms dimers on membrane surfaces via a protein-protein interface

(2014) W.-C. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Analysis of Three-Dimensional Fluorescence Localization Microscopy Data

(2013) Dylan M. Owen et al.   BIOPHYSICAL JOURNAL

Quantifying spatial organization in point-localization superresolution images using pair correlation analysis

(2013) Prabuddha Sengupta et al.   Nature Protocols

Analysis of the Spatial Organization of Molecules with Robust Statistics

(2013) Thibault Lagache et al.   PLoS One

Superresolution Microscopy Reveals Nanometer-Scale Reorganization of Inhibitory Natural Killer Cell Receptors upon Activation of NKG2D

(2013) S. V. Pageon et al.   Science Signaling

Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis

(2012) Prabuddha Sengupta et al.   BIOESSAYS

Active Remodeling of Cortical Actin Regulates Spatiotemporal Organization of Cell Surface Molecules

(2012) Kripa Gowrishankar et al.   CELL

Beyond ‘furballs’ and ‘dumpling soups’ - towards a molecular architecture of signaling complexes and networks

(2012) Marc Lewitzky et al.   FEBS LETTERS

Conformational states of the kinase Lck regulate clustering in early T cell signaling

(2012) Jérémie Rossy et al.   NATURE IMMUNOLOGY

A simple, versatile method for GFP-based super-resolution microscopy via nanobodies

(2012) Jonas Ries et al.   NATURE METHODS

rapidSTORM: accurate, fast open-source software for localization microscopy

(2012) Steve Wolter et al.   NATURE METHODS

Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting

(2012) Sarah L. Veatch et al.   PLoS One

Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM)

(2012) S.-H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sub-resolution lipid domains exist in the plasma membrane and regulate protein diffusion and distribution

(2012) Dylan M. Owen et al.   Nature Communications

Coordinate-based colocalization analysis of single-molecule localization microscopy data

(2011) Sebastian Malkusch et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Functional Nanoscale Organization of Signaling Molecules Downstream of the T Cell Antigen Receptor

(2011) Eilon Sherman et al.   IMMUNITY

A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching

(2011) Tanja Brakemann et al.   NATURE BIOTECHNOLOGY

Pre-existing clusters of the adaptor Lat do not participate in early T cell signaling events

(2011) David J Williamson et al.   NATURE IMMUNOLOGY

A photoswitchable orange-to-far-red fluorescent protein, PSmOrange

(2011) Oksana M Subach et al.   NATURE METHODS

Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis

(2011) Prabuddha Sengupta et al.   NATURE METHODS

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

Direct stochastic optical reconstruction microscopy with standard fluorescent probes

(2011) Sebastian van de Linde et al.   Nature Protocols

Quantitative Photo Activated Localization Microscopy: Unraveling the Effects of Photoblinking

(2011) Paolo Annibale et al.   PLoS One

PALM imaging and cluster analysis of protein heterogeneity at the cell surface

(2010) Dylan M. Owen et al.   Journal of Biophotonics

Photoactivatable Fluorescent Protein mEos2 Displays Repeated Photoactivation after a Long-Lived Dark State in the Red Photoconverted Form

(2010) P. Annibale et al.   Journal of Physical Chemistry Letters

QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ

(2010) Ricardo Henriques et al.   NATURE METHODS

Lipid Rafts As a Membrane-Organizing Principle

(2010) D. Lingwood et al.   SCIENCE

Super-Resolution Imaging with Small Organic Fluorophores

(2009) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

TCR and Lat are expressed on separate protein islands on T cell membranes and concatenate during activation

(2009) Björn F Lillemeier et al.   NATURE IMMUNOLOGY

Imaging biological structures with fluorescence photoactivation localization microscopy

(2009) Travis J Gould et al.   Nature Protocols

Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes

(2008) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Nanoclusters of GPI-Anchored Proteins Are Formed by Cortical Actin-Driven Activity

(2008) Debanjan Goswami et al.   CELL

Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics

(2008) Hari Shroff et al.   NATURE METHODS