Content-aware image restoration: pushing the limits of fluorescence microscopy

In Silico Labeling: Predicting Fluorescent Labels in Unlabeled Images

(2018) Eric M. Christiansen et al.   CELL

Deep learning massively accelerates super-resolution localization microscopy

(2018) Wei Ouyang et al.   NATURE BIOTECHNOLOGY

Quantitative mapping and minimization of super-resolution optical imaging artifacts

(2018) Siân Culley et al.   NATURE METHODS

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy

(2018) Chawin Ounkomol et al.   NATURE METHODS

Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms

(2018) Liyuan Sui et al.   Nature Communications

An objective comparison of cell-tracking algorithms

(2017) Vladimír Ulman et al.   NATURE METHODS

Data-analysis strategies for image-based cell profiling

(2017) Juan C Caicedo et al.   NATURE METHODS

Multicut brings automated neurite segmentation closer to human performance

(2017) Thorsten Beier et al.   NATURE METHODS

Assessing phototoxicity in live fluorescence imaging

(2017) P Philippe Laissue et al.   NATURE METHODS

Smooth 2D manifold extraction from 3D image stack

(2017) Asm Shihavuddin et al.   Nature Communications

A tunable refractive index matching medium for live imaging cells, tissues and model organisms

(2017) Tobias Boothe et al.   eLife

Deep learning microscopy

(2017) Yair Rivenson et al.   Optica

Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm

(2017) Nishan Shettigar et al.   Science Advances

Independent modes of ganglion cell translocation ensure correct lamination of the zebrafish retina

(2016) Jaroslav Icha et al.   JOURNAL OF CELL BIOLOGY

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

(2016) Loïc A Royer et al.   NATURE BIOTECHNOLOGY

Multiple signal classification algorithm for super-resolution fluorescence microscopy

(2016) Krishna Agarwal et al.   Nature Communications

Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ

(2016) Marcel Müller et al.   Nature Communications

Fast live-cell conventional fluorophore nanoscopy with ImageJ through super-resolution radial fluctuations

(2016) Nils Gustafsson et al.   Nature Communications

TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics

(2016) Raphaël Etournay et al.   eLife

Deep learning

(2015) Yann LeCun et al.   NATURE

The smart and gentle microscope

(2015) Nico Scherf et al.   NATURE BIOTECHNOLOGY

Whole-animal functional and developmental imaging with isotropic spatial resolution

(2015) Raghav K Chhetri et al.   NATURE METHODS

Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing

(2015) Raphaël Etournay et al.   eLife

A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture

(2015) Hernán Morales-Navarrete et al.   eLife

A benchmark for comparison of cell tracking algorithms

(2014) Martin Maška et al.   BIOINFORMATICS

Efficient Bayesian-based multiview deconvolution

(2014) Stephan Preibisch et al.   NATURE METHODS

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Age-Dependent Labeling and Imaging of Insulin Secretory Granules

(2013) A. Ivanova et al.   DIABETES

SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction

(2013) Meng-Tsen Ke et al.   NATURE NEUROSCIENCE

High-resolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio

(2013) M. Arigovindan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nonlocal Transform-Domain Filter for Volumetric Data Denoising and Reconstruction

(2012) M. Maggioni et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Kinetochores accelerate centrosome separation to ensure faithful chromosome segregation

(2012) Nunu Mchedlishvili et al.   JOURNAL OF CELL SCIENCE

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A Segmentation Clock with Two-Segment Periodicity in Insects

(2012) A. F. Sarrazin et al.   SCIENCE

Cell Flow Reorients the Axis of Planar Polarity in the Wing Epithelium of Drosophila

(2010) Benoît Aigouy et al.   CELL

Optimized localization analysis for single-molecule tracking and super-resolution microscopy

(2010) Kim I Mortensen et al.   NATURE METHODS

Subdiffraction resolution in continuous samples

(2009) Rainer Heintzmann et al.   Nature Photonics