Non-negligible roles of archaea in coastal carbon biogeochemical cycling

Diverse methylotrophic methanogenic archaea cause high methane emissions from seagrass meadows

(2022) Sina Schorn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic assemblage genomes analyses reveal the polysaccharides hydrolyzing potential of marine group II euryarchaea

(2022) Liping Qu et al.   ENVIRONMENTAL RESEARCH

Microbial communities in sandy beaches from the three domains of life differ by microhabitat and intertidal location

(2022) Noriko Okamoto et al.   MOLECULAR ECOLOGY

Metagenomic evidence for the microbial transformation of carboxyl-rich alicyclic molecules: A long-term macrocosm experiment

(2022) Changfei He et al.   WATER RESEARCH

Sugars dominate the seagrass rhizosphere

(2022) E. Maggie Sogin et al.   Nature Ecology & Evolution

Stimulation of Bathyarchaeota in enrichment cultures by syringaldehyde, 4-hydroxybenzaldehyde and vanillin under anaerobic conditions

(2022) Dan-Dan Lin et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis

(2022) Ya-Fei Ou et al.   ISME Journal

A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses

(2022) Daniel Tamarit et al.   Nature Microbiology

Three families of Asgard archaeal viruses identified in metagenome-assembled genomes

(2022) Sofia Medvedeva et al.   Nature Microbiology

Genomes of six viruses that infect Asgard archaea from deep-sea sediments

(2022) Ian M. Rambo et al.   Nature Microbiology

An Ancient Respiratory System in the Widespread Sedimentary Archaea Thermoprofundales

(2022) Xinxu Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Randomized national land management strategies for net-zero emissions

(2022) Colm Duffy et al.   Nature Sustainability

Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway

(2021) Jia-Wei Zhang et al.   ISME Journal

ANME ‐1 archaea may drive methane accumulation and removal in estuarine sediments

(2021) Richard T. Kevorkian et al.   Environmental Microbiology Reports

Anthropogenic and Environmental Constraints on the Microbial Methane Cycle in Coastal Sediments

(2021) Anna J. Wallenius et al.   Frontiers in Microbiology

Invasive Spartina alterniflora changes the Yangtze Estuary salt marsh from CH4 sink to source

(2021) Bin Yang et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Changes in Archaeal Community and Activity by the Invasion of Spartina anglica Along Soil Depth Profiles of a Coastal Wetland

(2021) Jinhyun Kim et al.   MICROBIAL ECOLOGY

Half of global methane emissions come from highly variable aquatic ecosystem sources

(2021) Judith A. Rosentreter et al.   Nature Geoscience

Diversity of dimethylsulfide‐degrading methanogens and sulfate‐reducing bacteria in anoxic sediments along the Medway Estuary, UK

(2021) Stephania L. Tsola et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds

(2021) Julia M. Kurth et al.   ISME Journal

Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota

(2021) Wen-Cong Huang et al.   Nature Communications

Dynamics of Methane in Mangrove Forest: Will It Worsen with Decreasing Mangrove Forests?

(2021) Hironori Arai et al.   Forests

Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species

(2021) Zhuo Zhou et al.   NATURE

Genomic and transcriptomic dissection of Theionarchaea in marine ecosystem

(2021) Mingwei Cai et al.   Science China-Life Sciences

Metatranscriptomics reveals different features of methanogenic archaea among global vegetated coastal ecosystems

(2021) Mingwei Cai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterization of Blf4, an Archaeal Lytic Virus Targeting a Member of the Methanomicrobiales

(2021) Katrin Weidenbach et al.   Viruses-Basel

A Synthesis of Methane Emissions from Shallow Vegetated Coastal Ecosystems

(2020) Alia N. Al‐Haj et al.   GLOBAL CHANGE BIOLOGY

Isolation of an archaeon at the prokaryote–eukaryote interface

(2020) Hiroyuki Imachi et al.   NATURE

Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean

(2020) Yao Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sonneratia apetala introduction alters methane cycling microbial communities and increases methane emissions

(2020) Xiaoli Yu et al.   SOIL BIOLOGY & BIOCHEMISTRY

The abundance and community structure of active ammonia-oxidizing archaea and ammonia-oxidizing bacteria shape their activities and contributions in coastal wetlands

(2020) Chen Wang et al.   WATER RESEARCH

The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient

(2020) Dayu Zou et al.   Frontiers in Microbiology

Spatial and seasonal variation of methanogenic community in a river-bay system in South China

(2020) Cui-Jing Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Influence of electron acceptor availability and microbial community structure on sedimentary methane oxidation in a boreal estuary

(2020) Jukka-Pekka Myllykangas et al.   BIOGEOCHEMISTRY

Elucidation of the rhizosphere microbiome linked to Spartina alterniflora phenotype in a salt marsh on Skidaway Island, Georgia, USA

(2020) Max Kolton et al.   FEMS MICROBIOLOGY ECOLOGY

Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation

(2020) Mingwei Cai et al.   Science China-Life Sciences

TiO2 nanoparticles accelerate methanogenesis in mangrove wetlands sediment

(2020) Wende Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota

(2020) Jie Pan et al.   Microbiome

Molecular and culture-based surveys of metabolically active hydrocarbon-degrading archaeal communities in Sundarban mangrove sediments

(2020) Shayantan Mukherji et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of Organic Phosphorus on Methylotrophic Methanogenesis in Coastal Lagoon Sediments With Seagrass (Zostera marina) Colonization

(2020) Shiling Zheng et al.   Frontiers in Microbiology

Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments

(2020) Cui-Jing Zhang et al.   Microbiome

Heavy metal pollution increases CH4 and decreases CO2 emissions due to soil microbial changes in a mangrove wetland: Microcosm experiment and field examination

(2020) Jiaojiao Ma et al.   CHEMOSPHERE

The soil microbial carbon pump: From conceptual insights to empirical assessments

(2020) Xuefeng Zhu et al.   GLOBAL CHANGE BIOLOGY

Coupled anaerobic methane oxidation and reductive arsenic mobilization in wetland soils

(2020) Ling-Dong Shi et al.   Nature Geoscience

Shifts in methanogenic archaea communities and methane dynamics along a subtropical estuarine land use gradient

(2020) Sebastian Euler et al.   PLoS One

Environmental methane emissions from seagrass wrack and evaluation of salinity effect on microbial community composition

(2020) Gloria Misson et al.   JOURNAL OF CLEANER PRODUCTION

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi

(2019) Joel A. Boyd et al.   ISME Journal

An evolving view of methane metabolism in the Archaea

(2019) Paul N. Evans et al.   NATURE REVIEWS MICROBIOLOGY

Expanding anaerobic alkane metabolism in the domain of Archaea

(2019) Yinzhao Wang et al.   Nature Microbiology

Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

(2019) Guillaume Borrel et al.   Nature Microbiology

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

(2019) Luke J. McKay et al.   Nature Microbiology

Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years

(2019) Lanlan Cai et al.   ISME Journal

Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments

(2019) Patricia Luis et al.   ENVIRONMENTAL MICROBIOLOGY

Asgard archaea capable of anaerobic hydrocarbon cycling

(2019) Kiley W. Seitz et al.   Nature Communications

Diversities and potential biogeochemical impacts of mangrove soil viruses

(2019) Min Jin et al.   Microbiome

Physiology and Distribution of Archaeal Methanotrophs That Couple Anaerobic Oxidation of Methane with Sulfate Reduction

(2019) S. Bhattarai et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments

(2019) Yingdong Li et al.   Scientific Reports

The role of fungi in heterogeneous sediment microbial networks

(2019) Jenny Marie Booth et al.   Scientific Reports

Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

(2019) Barbara Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of sea level change on coastal soil organic matter, priming effects and prokaryotic community assembly

(2019) Thomas Dinter et al.   FEMS MICROBIOLOGY ECOLOGY

Global-change controls on soil-carbon accumulation and loss in coastal vegetated ecosystems

(2019) Amanda C. Spivak et al.   Nature Geoscience

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes

(2019) Cui-Jing Zhang et al.   mSystems

Evidences of aromatic degradation dominantly via the phenylacetic acid pathway in marine benthic Thermoprofundales

(2019) Wei‐Wei Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Vulnerability of seagrass blue carbon to microbial attack following exposure to warming and oxygen

(2019) P.I. Macreadie et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The future of Blue Carbon science

(2019) Peter I. Macreadie et al.   Nature Communications

Community Structure and Abundance of Archaea in a Zostera marina Meadow: A Comparison between Seagrass-Colonized and Bare Sediment Sites

(2019) Pengfei Zheng et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Population dynamics of methanogens and methanotrophs along the salinity gradient in Pearl River Estuary: implications for methane metabolism

(2019) Songze Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Growth of sedimentaryBathyarchaeotaon lignin as an energy source

(2018) Tiantian Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Insights into the Phylogenetic and Metabolic Diversity of the Prokaryotic Community Dwelling in Hypersaline Soils from the Odiel Saltmarshes (SW Spain)

(2018) Blanca Vera-Gargallo et al.   Genes

Long-term nitrate removal through methane-dependent denitrification microorganisms in sequencing batch reactors fed with only nitrate and methane

(2018) Weiwei Li et al.   AMB Express

Abundance and distribution of Archaea in the subseafloor sedimentary biosphere

(2018) Tatsuhiko Hoshino et al.   ISME Journal

Denitrifying Anaerobic Methane Oxidation: A Previously Overlooked Methane Sink in Intertidal Zone

(2018) Jiaqi Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Electron shuttling mediated by humic substances fuels anaerobic methane oxidation and carbon burial in wetland sediments

(2018) Edgardo I. Valenzuela et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation

(2017) Wei Xie et al.   ENVIRONMENTAL MICROBIOLOGY

Can we manage coastal ecosystems to sequester more blue carbon?

(2017) Peter I Macreadie et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Bacterial and Archaeal Diversity in Hypersaline Cyanobacterial Mats Along a Transect in the Intertidal Flats of the Sultanate of Oman

(2017) Janina C. Vogt et al.   MICROBIAL ECOLOGY

Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study

(2017) C. Lavergne et al.   MICROBIAL ECOLOGY

Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing

(2017) Zhichao Zhou et al.   Frontiers in Microbiology

Distinct distribution patterns of prokaryotes between sediment and water in the Yellow River estuary

(2016) Guangshan Wei et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

(2016) Masaru Konishi Nobu et al.   ISME Journal

Archaeal communities in the sediments of different mangrove stands at Dongzhaigang, China

(2016) Wei Li et al.   JOURNAL OF SOILS AND SEDIMENTS

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea

(2016) Jong-Geol Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

(2016) Brett J. Baker et al.   Nature Microbiology

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

Virus-mediated archaeal hecatomb in the deep seafloor

(2016) R. Danovaro et al.   Science Advances

Spatial Variations of the Methanogenic Communities in the Sediments of Tropical Mangroves

(2016) Hongmei Jing et al.   PLoS One

Environmental controls on intragroup diversity of the uncultured benthicarchaeaof the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA)

(2015) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group

(2015) Travis B. Meador et al.   ENVIRONMENTAL MICROBIOLOGY

ExoticSpartina alterniflorainvasion alters ecosystem-atmosphere exchange of CH4and N2O and carbon sequestration in a coastal salt marsh in China

(2015) Junji Yuan et al.   GLOBAL CHANGE BIOLOGY

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Diversity and Distribution of Archaea in the Mangrove Sediment of Sundarbans

(2015) Anish Bhattacharyya et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea

(2015) Oluwatobi Oni et al.   Frontiers in Microbiology

amoAGene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom

(2014) Jialin Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaeal diversity and the extent of iron and manganese pyritization in sediments from a tropical mangrove creek (Cardoso Island, Brazil)

(2014) X.L. Otero et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Crenarchaeal heterotrophy in salt marsh sediments

(2014) Lauren M Seyler et al.   ISME Journal

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation

(2014) M. Konneke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane production potential and methanogenic archaea community dynamics along the Spartina alterniflora invasion chronosequence in a coastal salt marsh

(2013) Junji Yuan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways

(2013) Feng-Ping Wang et al.   ISME Journal

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

(2013) Jemaneh Zeleke et al.   Frontiers in Microbiology

Prokaryotes in salt marsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity

(2012) Vanessa Oliveira et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Shifts in phylogenetic diversity of archaeal communities in mangrove sediments at different sites and depths in southeastern Brazil

(2012) Lucas William Mendes et al.   RESEARCH IN MICROBIOLOGY

Microbial methane cycling in a terrestrial mud volcano in eastern Taiwan

(2011) Yung-Hsin Chang et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in methanogenic substrate utilization and communities with depth in a salt-marsh, creek sediment in southern England

(2011) R. John Parkes et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean

(2010) Nianzhi Jiao et al.   NATURE REVIEWS MICROBIOLOGY

Natural paradigms of plant cell wall degradation

(2009) Hui Wei et al.   CURRENT OPINION IN BIOTECHNOLOGY

Ni-exchanged montmorillonite with methyl-, dimethyl- and trimethylamine and their thermal properties

(2009) S. Šnircová et al.   JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY

Diversity of methanogenic archaea in a mangrove sediment and isolation of a newMethanococcoidesstrain

(2008) Thomas J. Lyimo et al.   FEMS MICROBIOLOGY LETTERS

Viruses in wetland ecosystems

(2008) EVELYN F. JACKSON et al.   FRESHWATER BIOLOGY