Coupled anaerobic methane oxidation and reductive arsenic mobilization in wetland soils

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

(2020) Andy O. Leu et al.   ISME Journal

Rates and Microbial Players of Iron-Driven Anaerobic Oxidation of Methane in Methanic Marine Sediments

(2020) David A. Aromokeye et al.   Frontiers in Microbiology

Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae

(2020) Andy O. Leu et al.   mBio

Humic Substances Facilitate Arsenic Reduction and Release in Flooded Paddy Soil

(2019) Jiangtao Qiao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Complete arsenic-based respiratory cycle in the marine microbial communities of pelagic oxygen-deficient zones

(2019) Jaclyn K. Saunders et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfate-reducing bacteria and methanogens are involved in arsenic methylation and demethylation in paddy soils

(2019) Chuan Chen et al.   ISME Journal

Multi-omics reveal various potential antimonate reductases from phylogenetically diverse microorganisms

(2019) Ling-Dong Shi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Rice production threatened by coupled stresses of climate and soil arsenic

(2019) E. Marie Muehe et al.   Nature Communications

An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs

(2019) Xiaoli Dong et al.   Frontiers in Genetics

A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction

(2018) Chen Cai et al.   ISME Journal

The role of sulfate-reducing prokaryotes in the coupling of element biogeochemical cycling

(2018) Peng Bao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Active pathways of anaerobic methane oxidation across contrasting riverbeds

(2018) Li-dong Shen et al.   ISME Journal

Evidence of Sulfate-Dependent Anaerobic Methane Oxidation within an Area Impacted by Coalbed Methane-Related Gas Migration

(2017) Amy L. Wolfe et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Transcriptional Activity of Arsenic-Reducing Bacteria and Genes Regulated by Lactate and Biochar during Arsenic Transformation in Flooded Paddy Soil

(2017) Jiang-tao Qiao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Linking Genes to Microbial Biogeochemical Cycling: Lessons from Arsenic

(2017) Yong-Guan Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Aerobic gammaproteobacterial methanotrophs mitigate methane emissions from oxic and anoxic lake waters

(2016) Kirsten Oswald et al.   LIMNOLOGY AND OCEANOGRAPHY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Extracellular electron transfer mechanisms between microorganisms and minerals

(2016) Liang Shi et al.   NATURE REVIEWS MICROBIOLOGY

Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction

(2016) S. Scheller et al.   SCIENCE

Seeing is believing: novel imaging techniques help clarify microbial nanowire structure and function

(2015) Derek R. Lovley et al.   ENVIRONMENTAL MICROBIOLOGY

Arsenic Biotransformation in Solid Waste Residue: Comparison of Contributions from Bacteria with Arsenate and Iron Reducing Pathways

(2015) Haixia Tian et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dissimilatory Arsenate Reduction and In Situ Microbial Activities and Diversity in Arsenic-rich Groundwater of Chianan Plain, Southwestern Taiwan

(2015) Suvendu Das et al.   MICROBIAL ECOLOGY

Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria

(2015) Gunter Wegener et al.   NATURE

Single cell activity reveals direct electron transfer in methanotrophic consortia

(2015) Shawn E. McGlynn et al.   NATURE

Cytochromes c in Archaea: distribution, maturation, cell architecture, and the special case of Ignicoccus hospitalis

(2015) Arnulf Kletzin et al.   Frontiers in Microbiology

Earth Abides Arsenic Biotransformations

(2014) Yong-Guan Zhu et al.   Annual Review of Earth and Planetary Sciences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Arsenic Mobility during Flooding of Contaminated Soil: The Effect of Microbial Sulfate Reduction

(2014) Edward D. Burton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Arsenic Concentrations in Paddy Soil and Rice and Health Implications for Major Rice-Growing Regions of Cambodia

(2014) Angelia L. Seyfferth et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Contamination: The toxic side of rice

(2014) Emily Sohn   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands

(2014) B.-l. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Release of Arsenic from Soil by a Novel Dissimilatory Arsenate-Reducing Bacterium, Anaeromyxobacter sp. Strain PSR-1

(2013) Keitaro Kudo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Arsenic Methylation in Soil and Rice Rhizosphere

(2013) Yan Jia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways

(2013) Feng-Ping Wang et al.   ISME Journal

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase

(2011) Andrzej J. Paszczynski et al.   BIODEGRADATION

Interactions between Perchlorate and Nitrate Reductions in the Biofilm of a Hydrogen-Based Membrane Biofilm Reactor

(2011) He-Ping Zhao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments

(2011) Jennifer F Biddle et al.   ISME Journal

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil

(2009) T. E. Freitag et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Arsenic Redox Changes by Microbially and Chemically Formed Semiquinone Radicals and Hydroquinones in a Humic Substance Model Quinone

(2009) Jie Jiang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Redox Transformation of Arsenic by Fe(II)-Activated Goethite (α-FeOOH)

(2009) Katja Amstaetter et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Molecular methods to detect and monitor dissimilatory arsenate-respiring bacteria (DARB) in sediments

(2009) Bongkeun Song et al.   FEMS MICROBIOLOGY ECOLOGY

Manganese- and Iron-Dependent Marine Methane Oxidation

(2009) E. J. Beal et al.   SCIENCE

Anaerobic Oxidation of Methane: Mechanisms, Bioenergetics, and the Ecology of Associated Microorganisms

(2008) Sara L. Caldwell et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Arsenic uptake and metabolism in plants

(2008) F. J. Zhao et al.   NEW PHYTOLOGIST

Transporters of arsenite in rice and their role in arsenic accumulation in rice grain

(2008) J. F. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA