Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column

(2019) Linta Reji et al.   ISME Journal

Does the Chemodiversity of Bacterial Exometabolomes Sustain the Chemodiversity of Marine Dissolved Organic Matter?

(2019) Beatriz E. Noriega-Ortega et al.   Frontiers in Microbiology

Co-culture and biogeography of Prochlorococcus and SAR11

(2019) Jamie W. Becker et al.   ISME Journal

Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium

(2019) Barbara Bayer et al.   mSystems

Mixing it up in the ocean carbon cycle and the removal of refractory dissolved organic carbon

(2018) Yuan Shen et al.   Scientific Reports

Planktonic Marine Archaea

(2018) Alyson E. Santoro et al.   Annual Review of Marine Science

Extraction efficiency and quantification of dissolved metabolites in targeted marine metabolomics

(2017) Winifred M. Johnson et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites

(2017) Gerrit Wienhausen et al.   Frontiers in Microbiology

Overlapping riboflavin supply pathways in bacteria

(2016) Víctor Antonio García-Angulo   CRITICAL REVIEWS IN MICROBIOLOGY

Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton

(2016) Ryan W Paerl et al.   ISME Journal

Deciphering ocean carbon in a changing world

(2016) Mary Ann Moran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two distinct pools of B12analogs reveal community interdependencies in the ocean

(2016) Katherine R. Heal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea

(2016) Jong-Geol Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Release of ecologically relevant metabolites by the cyanobacteriumSynechococcus elongatus CCMP 1631

(2015) Cara L. Fiore et al.   ENVIRONMENTAL MICROBIOLOGY

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

(2015) Barbara Bayer et al.   ISME Journal

Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean

(2015) Roberta L. Hansman et al.   MARINE CHEMISTRY

Environmental metabolomics: Analytical strategies

(2015) Melissa C. Kido Soule et al.   MARINE CHEMISTRY

Auxotrophy and intrapopulation complementary in the ‘interactome’ of a cultivated freshwater model community

(2015) Sarahi L. Garcia et al.   MOLECULAR ECOLOGY

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine sequestration of carbon in bacterial metabolites

(2015) Oliver J. Lechtenfeld et al.   Nature Communications

Characterization of Fatty Acids in Crenarchaeota by GC-MS and NMR

(2015) Timothy Hamerly et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

A Method Detection Limit for the Analysis of Natural Organic Matter via Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

(2014) Thomas Riedel et al.   ANALYTICAL CHEMISTRY

Phylogenomic reconstruction of archaeal fatty acid metabolism

(2014) Daria V. Dibrova et al.   ENVIRONMENTAL MICROBIOLOGY

Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea

(2014) Paul Carini et al.   ISME Journal

An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter

(2014) Nelson W. Green et al.   MARINE CHEMISTRY

Molecular evidence for rapid dissolved organic matter turnover in Arctic fjords

(2014) Helena Osterholz et al.   MARINE CHEMISTRY

Exo-Metabolome of Pseudovibrio sp. FO-BEG1 Analyzed by Ultra-High Resolution Mass Spectrometry and the Effect of Phosphate Limitation

(2014) Stefano Romano et al.   PLoS One

eulerAPE: Drawing Area-Proportional 3-Venn Diagrams Using Ellipses

(2014) Luana Micallef et al.   PLoS One

Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation

(2014) M. Konneke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Closely related phytoplankton species produce similar suites of dissolved organic matter

(2014) Jamie W. Becker et al.   Frontiers in Microbiology

Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria

(2013) Hugo Sarmento et al.   LIMNOLOGY AND OCEANOGRAPHY

Carbon fluxes through estuarine bacteria reflect coupling with phytoplankton

(2013) XAG Morán et al.   MARINE ECOLOGY PROGRESS SERIES

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

Engineering ecosystems and synthetic ecologies

(2012) Michael T. Mee et al.   Molecular BioSystems

A cross-platform toolkit for mass spectrometry and proteomics

(2012) Matthew C Chambers et al.   NATURE BIOTECHNOLOGY

Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Multiple B-vitamin depletion in large areas of the coastal ocean

(2012) S. A. Sanudo-Wilhelmy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Recalcitrant Dissolved Organic Carbon Fractions

(2011) Dennis A. Hansell   Annual Review of Marine Science

Contribution ofCrenarchaeotaandBacteriato autotrophy in the North Atlantic interior

(2011) Marta M. Varela et al.   ENVIRONMENTAL MICROBIOLOGY

A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater

(2011) Thorsten Dittmar et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The archaeal cell envelope

(2011) Sonja-Verena Albers et al.   NATURE REVIEWS MICROBIOLOGY

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

Metabolomic Analysis and Visualization Engine for LC−MS Data

(2010) Eugene Melamud et al.   ANALYTICAL CHEMISTRY

The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

(2010) Elizabeth B. Kujawinski   Annual Review of Marine Science

Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior

(2010) Thomas Reinthaler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Identification of possible source markers in marine dissolved organic matter using ultrahigh resolution mass spectrometry

(2009) Elizabeth B. Kujawinski et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

Chemistry of Marine Ligands and Siderophores

(2008) Julia M. Vraspir et al.   Annual Review of Marine Science

MODELING THE RELEASE OF DISSOLVED ORGANIC MATTER BY PHYTOPLANKTON1

(2008) Kevin J. Flynn et al.   JOURNAL OF PHYCOLOGY

The Vitamin Riboflavin and Its Derivative Lumichrome Activate the LasR Bacterial Quorum-Sensing Receptor

(2008) Sathish Rajamani et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SAR11 marine bacteria require exogenous reduced sulphur for growth

(2008) H. James Tripp et al.   NATURE