Elucidation of the rhizosphere microbiome linked to Spartina alterniflora phenotype in a salt marsh on Skidaway Island, Georgia, USA

Impact of Warming on Greenhouse Gas Production and Microbial Diversity in Anoxic Peat From a Sphagnum-Dominated Bog (Grand Rapids, Minnesota, United States)

(2019) Max Kolton et al.   Frontiers in Microbiology

The Biogeochemical Sulfur Cycle of Marine Sediments

(2019) Bo Barker Jørgensen et al.   Frontiers in Microbiology

Experimental warming alters the community composition, diversity, and N 2 fixation activity of peat moss ( Sphagnum fallax ) microbiomes

(2019) Alyssa A. Carrell et al.   GLOBAL CHANGE BIOLOGY

Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities

(2019) François Thomas et al.   PLoS One

Methanogenesis

(2018) Zhe Lyu et al.   CURRENT BIOLOGY

Different Height Forms of Spartina alterniflora Might Select Their Own Rhizospheric Bacterial Communities in Southern Coast of China

(2018) Li’an Lin et al.   MICROBIAL ECOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Strong associations between plant genotypes and bacterial communities in a natural salt marsh

(2018) Gregory P. Zogg et al.   Ecology and Evolution

Plant-Sediment Interactions in Salt Marshes – An Optode Imaging Study of O2, pH, and CO2 Gradients in the Rhizosphere

(2018) Ketil Koop-Jakobsen et al.   Frontiers in Plant Science

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Methanogens Are Major Contributors to Nitrogen Fixation in Soils of the Florida Everglades

(2018) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coastal marine habitats harbor novel early-diverging fungal diversity

(2017) Kathryn T. Picard   Fungal Ecology

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

(2017) Kenneth Wasmund et al.   Environmental Microbiology Reports

Structure, Variation, and Co-occurrence of Soil Microbial Communities in Abandoned Sites of a Rare Earth Elements Mine

(2016) Yuanqing Chao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Biochar-stimulated plant performance is strongly linked to microbial diversity and metabolic potential in the rhizosphere

(2016) Max Kolton et al.   NEW PHYTOLOGIST

Stability of peatland carbon to rising temperatures

(2016) R. M. Wilson et al.   Nature Communications

Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments

(2016) Patrick J. Kearns et al.   Nature Communications

Responses of soil nitrogen fixation to Spartina alterniflora invasion and nitrogen addition in a Chinese salt marsh

(2016) Jingxin Huang et al.   Scientific Reports

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

Anaerobic Fungi: A Potential Source of Biological H2 in the Oceanic Crust

(2016) Magnus Ivarsson et al.   Frontiers in Microbiology

Shifts in methanogen community structure and function across a coastal marsh transect: effects of exotic Spartina alterniflora invasion

(2016) Junji Yuan et al.   Scientific Reports

Rapid cycling of recently fixed carbon in a Spartina alterniflora system: a stable isotope tracer experiment

(2015) Amanda C. Spivak et al.   BIOGEOCHEMISTRY

Diversity of endophytic and rhizoplane bacterial communities associated with exotic Spartina alterniflora and native mangrove using Illumina amplicon sequencing

(2015) Youwei Hong et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Decoupled distance-decay patterns between dsrA and 16S rRNA genes among salt marsh sulfate-reducing bacteria

(2015) Angus Angermeyer et al.   ENVIRONMENTAL MICROBIOLOGY

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Microbial Community Composition and Extracellular Enzyme Activities Associated with Juncus roemerianus and Spartina alterniflora Vegetated Sediments in Louisiana Saltmarshes

(2015) Anthony J. Rietl et al.   MICROBIAL ECOLOGY

Obesity changes the human gut mycobiome

(2015) M. Mar Rodríguez et al.   Scientific Reports

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria

(2015) Shingo Kato et al.   Frontiers in Microbiology

Feature Selection with theBorutaPackage

(2015) Miron B. Kursa et al.   Journal of Statistical Software

Effects of Spartina alterniflora Invasion on Soil Respiration in the Yangtze River Estuary, China

(2015) Naishun Bu et al.   PLoS One

Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches

(2015) Stefan J. Green et al.   PLoS One

Nitrogen Fertilization Has a Stronger Effect on Soil Nitrogen-Fixing Bacterial Communities than Elevated Atmospheric CO2

(2014) Sean T. Berthrong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Stratification Linked to Utilization of Carbohydrates and Phosphorus Limitation in a Boreal Peatland at Marcell Experimental Forest, Minnesota, USA

(2014) Xueju Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimethylamine and Organic Matter Additions Reverse Substrate Limitation Effects on the δ13C Values of Methane Produced in Hypersaline Microbial Mats

(2014) Cheryl A. Kelley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic fungi (phylumNeocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential

(2014) Robert J. Gruninger et al.   FEMS MICROBIOLOGY ECOLOGY

Reclassification of Desulfobacterium anilini as Desulfatiglans anilini comb. nov. within Desulfatiglans gen. nov., and description of a 4-chlorophenol-degrading sulfate-reducing bacterium, Desulfatiglans parachlorophenolica sp. nov.

(2014) D. Suzuki et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

(2013) Jemaneh Zeleke et al.   Frontiers in Microbiology

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

Sulfide as a soil phytotoxin—a review

(2013) Leon P. M. Lamers et al.   Frontiers in Plant Science

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

High Sulfide Intrusion in Five Temperate Seagrasses Growing Under Contrasting Sediment Conditions

(2012) Marianne Holmer et al.   Estuaries and Coasts

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Carbon sequestration in wetland dominated coastal systems—a global sink of rapidly diminishing magnitude

(2012) Charles S Hopkinson et al.   Current Opinion in Environmental Sustainability

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Spartina alterniflora invasion increases soil inorganic nitrogen pools through interactions with tidal subsidies in the Yangtze Estuary, China

(2011) Rong Hao Peng et al.   OECOLOGIA

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Responses of Salt Marsh Plant Rhizosphere Diazotroph Assemblages to Changes in Marsh Elevation, Edaphic Conditions and Plant Host Species

(2010) Debra A. Davis et al.   MICROBIAL ECOLOGY

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rapid organic matter mineralization coupled to iron cycling in intertidal mud flats of the Han River estuary, Yellow Sea

(2009) Jung-Ho Hyun et al.   BIOGEOCHEMISTRY

Sulfide intrusion in the tropical seagrasses Thalassia testudinum and Syringodium filiforme

(2009) Marianne Holmer et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Salt marsh sediment bacteria: their distribution and response to external nutrient inputs

(2009) Jennifer L Bowen et al.   ISME Journal

Seasonal Variability of Diazotroph Assemblages Associated with the Rhizosphere of the Salt Marsh Cordgrass, Spartina alterniflora

(2009) Megan D. Gamble et al.   MICROBIAL ECOLOGY

Plant-rhizobacteria interactions alleviate abiotic stress conditions

(2009) CHRISTIAN DIMKPA et al.   PLANT CELL AND ENVIRONMENT

The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms)

(2009) Joyce C. Yang et al.   PLoS One

The Cellulase/Hemicellulase System of the Anaerobic FungusOrpinomycesPC-2 and Aspects of Its Applied Use

(2008) Lars G. Ljungdahl   Annals of the New York Academy of Sciences

Analysis of a diverse assemblage of diazotrophic bacteria from Spartina alterniflora using DGGE and clone library screening

(2008) Charles R. Lovell et al.   JOURNAL OF MICROBIOLOGICAL METHODS