Metagenomic Insights into the Phylogenetic and Metabolic Diversity of the Prokaryotic Community Dwelling in Hypersaline Soils from the Odiel Saltmarshes (SW Spain)

Prokaryotic diversity and community composition in the Salar de Uyuni, a large scale, chaotropic salt flat

(2017) Sergio S. dC Rubin et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and Archaeal Diversity in Hypersaline Cyanobacterial Mats Along a Transect in the Intertidal Flats of the Sultanate of Oman

(2017) Janina C. Vogt et al.   MICROBIAL ECOLOGY

Corrigendum to “Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov” [Syst. Appl. Microbiol. 39 (7) (2016) 491–492]

(2017) Raul Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria

(2017) Olaf Tyc et al.   TRENDS IN MICROBIOLOGY

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics

(2017) Kari M. Finstad et al.   Frontiers in Microbiology

Prokaryotic Community Distribution along an Ecological Gradient of Salinity in Surface and Subsurface Saline Soils

(2017) Kehui Xie et al.   Scientific Reports

Back to the Future of Soil Metagenomics

(2016) Joseph Nesme et al.   Frontiers in Microbiology

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes

(2016) Zachary T. Aanderud et al.   Frontiers in Microbiology

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

(2016) Charlotte D. Vavourakis et al.   Frontiers in Microbiology

Genome-Based Taxonomic Classification of Bacteroidetes

(2016) Richard L. Hahnke et al.   Frontiers in Microbiology

Recovering complete and draft population genomes from metagenome datasets

(2016) Naseer Sangwan et al.   Microbiome

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

(2016) Adam G. Clooney et al.   PLoS One

The biogeography of soil archaeal communities on the eastern Tibetan Plateau

(2016) Yu Shi et al.   Scientific Reports

Halophilic microbial communities and their environments

(2015) Aharon Oren   CURRENT OPINION IN BIOTECHNOLOGY

Microbial diversity of hypersaline environments: a metagenomic approach

(2015) Antonio Ventosa et al.   CURRENT OPINION IN MICROBIOLOGY

A snapshot of microbial communities from the Kutch: one of the largest salt deserts in the World

(2015) Aanal S. Pandit et al.   EXTREMOPHILES

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Global change pressures on soils from land use and management

(2015) Pete Smith et al.   GLOBAL CHANGE BIOLOGY

COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets

(2015) Tungadri Bose et al.   PLoS One

Socially mediated induction and suppression of antibiosis during bacterial coexistence

(2015) Monica I. Abrudan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal Communities in a Heterogeneous Hypersaline-Alkaline Soil

(2015) Yendi E. Navarro-Noya et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

(2015) Cedric C Laczny et al.   Microbiome

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

From Metagenomics to Pure Culture: Isolation and Characterization of the Moderately Halophilic Bacterium Spiribacter salinus gen. nov., sp. nov.

(2014) María José León et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and temporal distribution of archaeal diversity in meromictic, hypersaline Ocnei Lake (Transylvanian Basin, Romania)

(2014) Andreea Baricz et al.   EXTREMOPHILES

The Santa Pola saltern as a model for studying the microbiota of hypersaline environments

(2014) Antonio Ventosa et al.   EXTREMOPHILES

Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics

(2014) Ana B. Fernández et al.   FEMS MICROBIOLOGY ECOLOGY

From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists

(2014) María Gomariz et al.   ISME Journal

Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?

(2014) Loredana Canfora et al.   PLoS One

Unveiling viral–host interactions within the ‘microbial dark matter’

(2014) Manuel Martínez-García et al.   Nature Communications

Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response

(2014) Erin A. Becker et al.   PLoS Genetics

Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach

(2014) Ana B. Fernández et al.   Frontiers in Microbiology

GroopM: an automated tool for the recovery of population genomes from related metagenomes

(2014) Michael Imelfort et al.   PeerJ

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Predicting ECe of the saturated paste extract from value of EC1:5

(2013) Yangbo He et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Geochemical behavior of metals and metalloids in an estuary affected by acid mine drainage (AMD)

(2013) A. Hierro et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Cell sorting analysis of geographically separated hypersaline environments

(2013) Olga Zhaxybayeva et al.   EXTREMOPHILES

Diversity and distribution ofHalomonasin Rambla Salada, a hypersaline environment in the southeast of Spain

(2013) Nahid Oueriaghli et al.   FEMS MICROBIOLOGY ECOLOGY

Potential ofSpartina maritimain Restored Salt Marshes for Phytoremediation of Metals in a Highly Polluted Estuary

(2013) G. Curado et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Molecular Ecology Techniques Reveal Both Spatial and Temporal Variations in the Diversity of Archaeal Communities within the Athalassohaline Environment of Rambla Salada, Spain

(2013) Nahid Oueriaghli et al.   MICROBIAL ECOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

A meta-analysis of the publicly available bacterial and archaeal sequence diversity in saline soils

(2013) Bin Ma et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico

(2013) Jesse G. Dillon et al.   Frontiers in Microbiology

The global technical and economic potential of bioenergy from salt-affected soils

(2011) Birka Wicke et al.   Energy & Environmental Science

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

Exploration of community traits as ecological markers in microbial metagenomes

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

Response of microbial activity and community structure to decreasing soil osmotic and matric potential

(2011) Nasrin Chowdhury et al.   PLANT AND SOIL

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Heavy metal mobility assessment in sediments from the Odiel River (Iberian Pyritic Belt) using sequential extraction

(2010) Rafael Beltrán et al.   Environmental Earth Sciences

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

(2010) Rohit Ghai et al.   ISME Journal

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments

(2010) Emily B Hollister et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Hydration-controlled bacterial motility and dispersal on surfaces

(2010) A. Dechesne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes in the bacterial populations of the highly alkaline saline soil of the former lake Texcoco (Mexico) following flooding

(2009) César Valenzuela-Encinas et al.   EXTREMOPHILES

Archaeal Diversity at the Great Salt Plains of Oklahoma Described by Cultivation and Molecular Analyses

(2009) T. M. Caton et al.   MICROBIAL ECOLOGY

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Plant zonation at salt marshes of the endangered cordgrass Spartina maritima invaded by Spartina densiflora

(2008) Jesús M. Castillo et al.   HYDROBIOLOGIA

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

(2008) Sandip Paul et al.   GENOME BIOLOGY