CRISPR/Cas mediated genome editing in potato: Past achievements and future directions

CRISPR/Cas9-Mediated Mutagenesis of the Granule-Bound Starch Synthase Gene in the Potato Variety Yukon Gold to Obtain Amylose-Free Starch in Tubers

(2022) Stephany Toinga-Villafuerte et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Targeted base editing in the mitochondrial genome of Arabidopsis thaliana

(2022) Issei Nakazato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR-Cas9 Targeting of the eIF4E1 Gene Extends the Potato Virus Y Resistance Spectrum of the Solanum tuberosum L. cv. Desirée

(2022) Alessandra Lucioli et al.   Frontiers in Microbiology

Genome evolution and diversity of wild and cultivated potatoes

(2022) Dié Tang et al.   NATURE

Epigenetic features drastically impact CRISPR–Cas9 efficacy in plants

(2022) Trevor Weiss et al.   PLANT PHYSIOLOGY

Comparative potato genome editing: Agrobacterium tumefaciens-mediated transformation and protoplasts transfection delivery of CRISPR/Cas9 components directed to StPPO2 gene

(2021) Matías Nicolás González et al.   PLANT CELL TISSUE AND ORGAN CULTURE

High-efficiency and multiplex adenine base editing in plants using new TadA variants

(2021) Daqi Yan et al.   Molecular Plant

Nanotechnology to advance CRISPR–Cas genetic engineering of plants

(2021) Gozde S. Demirer et al.   Nature Nanotechnology

Mutations introduced in susceptibility genes through CRISPR/Cas9 genome editing confer increased late blight resistance in potatoes

(2021) Nam Phuong Kieu et al.   Scientific Reports

Amylose starch with no detectable branching developed through DNA-free CRISPR-Cas9 mediated mutagenesis of two starch branching enzymes in potato

(2021) Xue Zhao et al.   Scientific Reports

CRISPR/dCas-mediated transcriptional and epigenetic regulation in plants

(2021) Changtian Pan et al.   CURRENT OPINION IN PLANT BIOLOGY

Highly efficient C‐to‐T and A‐to‐G base editing in a Populus hybrid

(2021) Gen Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems

(2021) Yingxiao Zhang et al.   Nature Communications

Improved plant cytosine base editors with high editing activity, purity, and specificity

(2021) Qiurong Ren et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome- and transcriptome-wide off-target analyses of an improved cytosine base editor

(2021) Linnell Bentley Randall et al.   PLANT PHYSIOLOGY

Neofunctionalisation of the Sli gene leads to self-compatibility and facilitates precision breeding in potato

(2021) Ernst-Jan Eggers et al.   Nature Communications

Targeting of SPCSV‐ RNase3 via CRISPR‐Cas13 confers resistance against sweet potato virus disease

(2021) Yicheng Yu et al.   MOLECULAR PLANT PATHOLOGY

Creation of a potato mutant lacking the starch branching enzyme gene StSBE3 that was generated by genome editing using the CRISPR/dMac3-Cas9 system

(2021) Ami Takeuchi et al.   Plant Biotechnology

Prime Editing in the model plant Physcomitrium patens and its potential in the tetraploid potato

(2021) Pierre-François Perroud et al.   PLANT SCIENCE

Facilitating gene editing in potato: a Single-Nucleotide Polymorphism (SNP) map of the Solanum tuberosum L. cv. Desiree genome

(2020) François Sevestre et al.   Scientific Reports

Reduced Enzymatic Browning in Potato Tubers by Specific Editing of a Polyphenol Oxidase Gene via Ribonucleoprotein Complexes Delivery of the CRISPR/Cas9 System

(2020) Matías Nicolás González et al.   Frontiers in Plant Science

The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication

(2020) Ygor Parladore Silva et al.   Frontiers in Endocrinology

Generation of transgene-free PDS mutants in potato by Agrobacterium-mediated transformation

(2020) Zsófia Bánfalvi et al.   BMC BIOTECHNOLOGY

First‐generation genome editing in potato using hairy root transformation

(2020) Nathaniel M. Butler et al.   PLANT BIOTECHNOLOGY JOURNAL

Resistance to acetolactate synthase inhibitors is due to a W 574 to L amino acid substitution in the ALS gene of redroot pigweed and tall waterhemp

(2020) Vijay K. Nandula et al.   PLoS One

Potato virus X Vector-Mediated DNA-Free genome editing in plants

(2020) Hirotaka Ariga et al.   PLANT AND CELL PHYSIOLOGY

CRISPR-induced indels and base editing using the Staphylococcus aureus Cas9 in potato

(2020) Florian Veillet et al.   PLoS One

Short chain fatty acids in human gut and metabolic health

(2020) E.E. Blaak et al.   Beneficial Microbes

Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor

(2019) Florian Veillet et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The genetic basis of inbreeding depression in potato

(2019) Chunzhi Zhang et al.   NATURE GENETICS

Regeneration of Solanum tuberosum plants from protoplasts induces widespread genome instability

(2019) Michelle Fossi et al.   PLANT PHYSIOLOGY

CRISPR ‐LbCas12a‐mediated modification of citrus

(2019) Hongge Jia et al.   PLANT BIOTECHNOLOGY JOURNAL

Generation of virus-resistant potato plants by RNA genome targeting

(2019) Xiaohui Zhan et al.   PLANT BIOTECHNOLOGY JOURNAL

Application of CRISPR-Cas12a temperature sensitivity for improved genome editing in rice, maize, and Arabidopsis

(2019) Aimee A. Malzahn et al.   BMC BIOLOGY

Assessment of Cas12a‐mediated gene editing efficiency in plants

(2019) Joan Miquel Bernabé‐Orts et al.   PLANT BIOTECHNOLOGY JOURNAL

Cas9‐mediated mutagenesis of potato starch‐branching enzymes generates a range of tuber starch phenotypes

(2019) Aytug Tuncel et al.   PLANT BIOTECHNOLOGY JOURNAL

The Solanum tuberosum GBSSI gene: a target for assessing gene and base editing in tetraploid potato

(2019) Florian Veillet et al.   PLANT CELL REPORTS

Overcoming Self-Incompatibility in Diploid Potato Using CRISPR-Cas9

(2019) Felix Enciso-Rodriguez et al.   Frontiers in Plant Science

Callus, Dedifferentiation, Totipotency, Somatic Embryogenesis: What These Terms Mean in the Era of Molecular Plant Biology?

(2019) Attila Fehér   Frontiers in Plant Science

Engineering CRISPR/ Lb Cas12a for highly efficient, temperature‐tolerant plant gene editing

(2019) Patrick Schindele et al.   PLANT BIOTECHNOLOGY JOURNAL

High efficacy full allelic CRISPR/Cas9 gene editing in tetraploid potato

(2019) Ida Elisabeth Johansen et al.   Scientific Reports

Plant gene editing through de novo induction of meristems

(2019) Michael F. Maher et al.   NATURE BIOTECHNOLOGY

Resistant starch and other dietary fiber components in tubers from a high-amylose potato

(2018) Xue Zhao et al.   FOOD CHEMISTRY

Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture

(2018) Zhaoxue Han et al.   GENETICS

Genome editing in potato via CRISPR-Cas9 ribonucleoprotein delivery

(2018) Mariette Andersson et al.   PHYSIOLOGIA PLANTARUM

Activities and specificities of CRISPR-Cas9 and Cas12a nucleases for targeted mutagenesis in maize

(2018) Keunsub Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

Generation of α-solanine-free hairy roots of potato by CRISPR/Cas9 mediated genome editing of the St16DOX gene

(2018) Masaru Nakayasu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture

(2018) Zhaoxue Han et al.   GENETICS

Establishment of a modified CRISPR/Cas9 system with increased mutagenesis frequency using the translational enhancer dMac3 and multiple guide RNAs in potato

(2018) Hiroaki Kusano et al.   Scientific Reports

Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A

(2018) Yuan Zong et al.   NATURE BIOTECHNOLOGY

Domestication of wild tomato is accelerated by genome editing

(2018) Tingdong Li et al.   NATURE BIOTECHNOLOGY

Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races

(2018) Marc Ghislain et al.   PLANT BIOTECHNOLOGY JOURNAL

Waxy starch as a perspective raw material (a review)

(2017) Evžen Šárka et al.   FOOD HYDROCOLLOIDS

Polyphenol Oxidases in Crops: Biochemical, Physiological and Genetic Aspects

(2017) Francesca Taranto et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato

(2017) Xiangjun Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System

(2017) Mugui Wang et al.   Molecular Plant

RNA targeting with CRISPR–Cas13

(2017) Omar O. Abudayyeh et al.   NATURE

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion

(2017) Zenpei Shimatani et al.   NATURE BIOTECHNOLOGY

Generation of targeted mutant rice using a CRISPR-Cpf1 system

(2017) Rongfang Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress

(2017) Chantal LeBlanc et al.   PLANT JOURNAL

The Multiple Signals That Control Tuber Formation

(2017) David J. Hannapel et al.   PLANT PHYSIOLOGY

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

(2017) Zhen Liang et al.   Nature Communications

Plant genome editing with TALEN and CRISPR

(2017) Aimee Malzahn et al.   Cell and Bioscience

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

(2016) Daesik Kim et al.   NATURE BIOTECHNOLOGY

Patterns of CRISPR/Cas9 activity in plants, animals and microbes

(2016) Luisa Bortesi et al.   PLANT BIOTECHNOLOGY JOURNAL

Efficient targeted multiallelic mutagenesis in tetraploid potato (Solanum tuberosum) by transient CRISPR-Cas9 expression in protoplasts

(2016) Mariette Andersson et al.   PLANT CELL REPORTS

Silencing of six susceptibility genes results in potato late blight resistance

(2016) Kaile Sun et al.   TRANSGENIC RESEARCH

Genome editing in maize directed by CRISPR–Cas9 ribonucleoprotein complexes

(2016) Sergei Svitashev et al.   Nature Communications

Geminivirus-Mediated Genome Editing in Potato (Solanum tuberosum L.) Using Sequence-Specific Nucleases

(2016) Nathaniel M. Butler et al.   Frontiers in Plant Science

Transcription Activator-Like Effector Nucleases (TALEN)-Mediated Targeted DNA Insertion in Potato Plants

(2016) Adrienne Forsyth et al.   Frontiers in Plant Science

Potato genetics, genomics, and applications

(2015) Kazuo Watanabe   BREEDING SCIENCE

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

(2015) Bernd Zetsche et al.   CELL

Targeted gene mutation in tetraploid potato through transient TALEN expression in protoplasts

(2015) Alessandro Nicolia et al.   JOURNAL OF BIOTECHNOLOGY

Function and information content of DNA methylation

(2015) Dirk Schübeler   NATURE

Improving cold storage and processing traits in potato through targeted gene knockout

(2015) Benjamin M. Clasen et al.   PLANT BIOTECHNOLOGY JOURNAL

Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system

(2015) Shaohui Wang et al.   PLANT CELL REPORTS

Role of Resistant Starch in Improving Gut Health, Adiposity, and Insulin Resistance

(2015) Michael J Keenan et al.   Advances in Nutrition

Off-target Effects in CRISPR/Cas9-mediated Genome Engineering

(2015) Xiao-Hui Zhang et al.   Molecular Therapy-Nucleic Acids

Generation and Inheritance of Targeted Mutations in Potato (Solanum tuberosum L.) Using the CRISPR/Cas System

(2015) Nathaniel M. Butler et al.   PLoS One

Reduced polyphenol oxidase gene expression and enzymatic browning in potato (Solanum tuberosum L.) with artificial microRNAs

(2014) Ming Chi et al.   BMC PLANT BIOLOGY

DNA Replicons for Plant Genome Engineering

(2014) N. J. Baltes et al.   PLANT CELL

Sterol Side Chain Reductase 2 Is a Key Enzyme in the Biosynthesis of Cholesterol, the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato

(2014) S. Sawai et al.   PLANT CELL

Acrylamide in Processed Potato Products

(2013) Paul C. Bethke et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Potato virus Y: a major crop pathogen that has provided major insights into the evolution of viral pathogenicity

(2013) Julie Quenouille et al.   MOLECULAR PLANT PATHOLOGY

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

Plants regenerated from tissue culture contain stable epigenome changes in rice

(2013) Hume Stroud et al.   eLife

Down-regulation ofCBP80gene expression as a strategy to engineer a drought-tolerant potato

(2012) Marcin Pieczynski et al.   PLANT BIOTECHNOLOGY JOURNAL

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Control of flowering and storage organ formation in potato by FLOWERING LOCUS T

(2011) Cristina Navarro et al.   NATURE

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Molecular Spectrum of Somaclonal Variation in Regenerated Rice Revealed by Whole-Genome Sequencing

(2011) Akio Miyao et al.   PLANT AND CELL PHYSIOLOGY

Enhancing ascorbate in fruits and tubers through over-expression of the l-galactose pathway gene GDP-l-galactose phosphorylase

(2011) Sean Bulley et al.   PLANT BIOTECHNOLOGY JOURNAL

Functional stacking of three resistance genes against Phytophthora infestans in potato

(2011) Suxian Zhu et al.   TRANSGENIC RESEARCH

Starch: Its Metabolism, Evolution, and Biotechnological Modification in Plants

(2010) Samuel C. Zeeman et al.   Annual Review of Plant Biology

Using quantitative real-time PCR to detect chimeras in transgenic tobacco and apricot and to monitor their dissociation

(2010) Mohamed Faize et al.   BMC BIOTECHNOLOGY

AHAS herbicide resistance endowing mutations: effect on AHAS functionality and plant growth

(2010) Qin Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Collaborative Non-Self Recognition System in S-RNase-Based Self-Incompatibility

(2010) K.-i. Kubo et al.   SCIENCE