Genome sequence and analysis of the tuber crop potato

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genome-wide patterns of genetic variation among elite maize inbred lines

(2010) Jinsheng Lai et al.   NATURE GENETICS

Sequencing the Potato Genome: Outline and First Results to Come from the Elucidation of the Sequence of the World’s Third Most Important Food Crop

(2009) Richard G. F. Visser et al.   AMERICAN JOURNAL OF POTATO RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Assignment of genetic linkage maps to diploid Solanum tuberosum pachytene chromosomes by BAC-FISH technology

(2009) Xiaomin Tang et al.   CHROMOSOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Nutrients, bioactive non-nutrients and anti-nutrients in potatoes

(2009) Barbara Burlingame et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family

(2009) Brad W. Porter et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide identification of NBS-encoding resistance genes in Brassica rapa

(2009) Jeong-Hwan Mun et al.   MOLECULAR GENETICS AND GENOMICS

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Glucose 1-phosphate is efficiently taken up by potato (Solanum tuberosum) tuber parenchyma cells and converted to reserve starch granules

(2009) Joerg Fettke et al.   NEW PHYTOLOGIST

PRGdb: a bioinformatics platform for plant resistance gene analysis

(2009) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

Solanum lycopersicumcv. Heinz 1706 chromosome 6: distribution and abundance of genes and retrotransposable elements

(2009) Sander A. Peters et al.   PLANT JOURNAL

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

(2009) J. A. Fawcett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

DupMasker: A tool for annotating primate segmental duplications

(2008) Z. Jiang et al.   GENOME RESEARCH

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) Annegret Kohler et al.   PLANT MOLECULAR BIOLOGY