The gut virome: A new microbiome component in health and disease

Gut microbiota-derived bile acids in intestinal immunity, inflammation, and tumorigenesis

(2022) Jie Cai et al.   Cell Host & Microbe

Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19

(2021) Yun Kit Yeoh et al.   GUT

Clostridioides difficile Phage Biology and Application

(2021) Joshua Heuler et al.   FEMS MICROBIOLOGY REVIEWS

Xenogeneic silencing relies on temperature-dependent phosphorylation of the host H-NS protein in Shewanella

(2021) Xiaoxiao Liu et al.   NUCLEIC ACIDS RESEARCH

Common Oral Medications Lead to Prophage Induction in Bacterial Isolates from the Human Gut

(2021) Steven G. Sutcliffe et al.   Viruses-Basel

Bacteriophage uptake by mammalian cell layers represents a potential sink that may impact phage therapy

(2021) Marion C. Bichet et al.   iScience

Gut Susceptibility to Viral Invasion: Contributing Roles of Diet, Microbiota and Enteric Nervous System to Mucosal Barrier Preservation

(2021) Marcela Julio-Pieper et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emerging Roles of Gut Virome in Pediatric Diseases

(2021) Valerio Fulci et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The human virome: assembly, composition and host interactions

(2021) Guanxiang Liang et al.   NATURE REVIEWS MICROBIOLOGY

A Roadmap for Genome-Based Phage Taxonomy

(2021) Dann Turner et al.   Viruses-Basel

The healthy human virome: from virus–host symbiosis to disease

(2021) Eugene V Koonin et al.   Current Opinion in Virology

Gut microbiome ADP-ribosyltransferases are widespread phage-encoded fitness factors

(2021) Eric M. Brown et al.   Cell Host & Microbe

Fecal filtrate transplantation protects against necrotizing enterocolitis

(2021) Anders Brunse et al.   ISME Journal

Metagenomic analysis of primary colorectal carcinomas and their metastases identifies potential microbial risk factors

(2021) Luigi Marongiu et al.   Molecular Oncology

Findings from Studies Are Congruent with Obesity Having a Viral Origin, but What about Obesity-Related NAFLD?

(2021) Giovanni Tarantino et al.   Viruses-Basel

Alterations, Interactions, and Diagnostic Potential of Gut Bacteria and Viruses in Colorectal Cancer

(2021) Renyuan Gao et al.   Frontiers in Cellular and Infection Microbiology

Bacteriophages and the Immune System

(2021) Medeea Popescu et al.   Annual Review of Virology

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome

(2021) Stephen Nayfach et al.   Nature Microbiology

Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus

(2021) Keli Yang et al.   GASTROENTEROLOGY

Valid publication of the names of forty-two phyla of prokaryotes

(2021) Aharon Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Current and Future Perspectives on the Role of Probiotics, Prebiotics, and Synbiotics in Controlling Pathogenic Cronobacter Spp. in Infants

(2021) Alfred Ke et al.   Frontiers in Microbiology

The Immunomodulatory Functions of Butyrate

(2021) Mohamed Tausif Siddiqui et al.   Journal of Inflammation Research

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner

(2020) Mohammadali Khan Mirzaei et al.   Cell Host & Microbe

Diarrhoea may be underestimated: a missing link in 2019 novel coronavirus

(2020) Weicheng Liang et al.   GUT

Myoviridae phage PDX kills enteroaggregative Escherichia coli without human microbiome dysbiosis

(2020) Leah C. S. Cepko et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The crAss-like Phage Group: How Metagenomics Reshaped the Human Virome

(2020) Eugene V. Koonin et al.   TRENDS IN MICROBIOLOGY

Fecal Viral Community Responses to High-Fat Diet in Mice

(2020) Anjelique Schulfer et al.   mSphere

Expansion of known ssRNA phage genomes: From tens to over a thousand

(2020) J. Callanan et al.   Science Advances

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome

(2020) Lance Boling et al.   Gut Microbes

Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization

(2020) Tao Zuo et al.   GASTROENTEROLOGY

Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

(2020) Torben Sølbeck Rasmussen et al.   GUT

In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials

(2020) Kurt Selle et al.   mBio

Phages and Their Role in Gastrointestinal Disease: Focus on Inflammatory Bowel Disease

(2020) Martin Maronek et al.   Cells

Congenital Diarrheal Diseases

(2020) Mira Younis et al.   CLINICS IN PERINATOLOGY

Bacteriophage-mediated manipulation of the gut microbiome – promises and presents limitations

(2020) Torben Sølbeck Rasmussen et al.   FEMS MICROBIOLOGY REVIEWS

Alterations in Fecal Fungal Microbiome of Patients With COVID-19 During Time of Hospitalization until Discharge

(2020) Tao Zuo et al.   GASTROENTEROLOGY

Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease

(2020) Sonja Lang et al.   GASTROENTEROLOGY

Intestinal virome in patients with alcoholic hepatitis

(2020) Lu Jiang et al.   HEPATOLOGY

The use of fecal microbiota transplant in sepsis

(2020) Robert Keskey et al.   Translational Research

Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children

(2020) Chandni Desai et al.   PLoS Neglected Tropical Diseases

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Human-Gut-DNA Virome Variations across Geography, Ethnicity, and Urbanization

(2020) Tao Zuo et al.   Cell Host & Microbe

Phages and their potential to modulate the microbiome and immunity

(2020) Sara Federici et al.   Cellular & Molecular Immunology

Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy

(2020) Jasmohan S Bajaj et al.   GUT

Phage Therapy in Gastrointestinal Diseases

(2020) Beatriz Gutiérrez et al.   Microorganisms

Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation

(2020) Lorraine A. Draper et al.   BMC BIOLOGY

Inflammatory Bowel Diseases (IBD) and the Microbiome—Searching the Crime Scene for Clues

(2020) Mirae Lee et al.   GASTROENTEROLOGY

Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients

(2020) Erez N. Baruch et al.   SCIENCE

Therapeutic Perspectives and Mechanistic Insights of Phage Therapy in Allotransplantation

(2020) Kenneth J. Dery et al.   TRANSPLANTATION

Effects of Fecal Microbiome Transfer in Adolescents With Obesity

(2020) Karen S. W. Leong et al.   JAMA Network Open

Bacteriophage Interactions with Mammalian Tissue: Therapeutic Applications

(2019) Haein Huh et al.   ADVANCED DRUG DELIVERY REVIEWS

Phage therapy: What factors shape phage pharmacokinetics and bioavailability? Systematic and critical review

(2019) Krystyna Dąbrowska   MEDICINAL RESEARCH REVIEWS

Gut mucosal virome alterations in ulcerative colitis

(2019) Tao Zuo et al.   GUT

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

(2019) Lasha Gogokhia et al.   Cell Host & Microbe

Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria

(2019) Kaitlyn E. Kortright et al.   Cell Host & Microbe

Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Viral complementation of immunodeficiency confers protection against enteric pathogens via interferon-λ

(2019) Harshad Ingle et al.   Nature Microbiology

Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales

(2019) Soo Jen Low et al.   Nature Microbiology

Phage Therapy in the Twenty-First Century: Facing the Decline of The Antibiotic Era; Is it Finally Time for The Age of the Phage?

(2019) Shayla Hesse et al.   Annual Review of Microbiology

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model

(2019) Bryan B. Hsu et al.   Cell Host & Microbe

Lower Incidence Rate of Type 1 Diabetes after Receipt of the Rotavirus Vaccine in the United States, 2001–2017

(2019) Mary A. M. Rogers et al.   Scientific Reports

IFN-I and IL-22 mediate protective effects of intestinal viral infection

(2019) Jessica A Neil et al.   Nature Microbiology

Phage-guided modulation of the gut microbiota of mouse models of colorectal cancer augments their responses to chemotherapy

(2019) Di-Wei Zheng et al.   Nature Biomedical Engineering

Inflammatory Bowel Disease Presentation and Diagnosis

(2019) Sean Flynn et al.   SURGICAL CLINICS OF NORTH AMERICA

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion

(2019) Martin T. Jahn et al.   Cell Host & Microbe

The gut-liver axis in liver disease: pathophysiological basis for therapy

(2019) Agustín Albillos et al.   JOURNAL OF HEPATOLOGY

Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease

(2019) Yi Duan et al.   NATURE

Commensal viruses maintain intestinal intraepithelial lymphocytes via noncanonical RIG-I signaling

(2019) Lei Liu et al.   NATURE IMMUNOLOGY

Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

(2019) Adam G. Clooney et al.   Cell Host & Microbe

Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes

(2018) Geicho Nakatsu et al.   GASTROENTEROLOGY

Urbanization and the gut microbiota in health and inflammatory bowel disease

(2018) Tao Zuo et al.   Nature Reviews Gastroenterology & Hepatology

A human gut phage catalog correlates the gut phageome with type 2 diabetes

(2018) Yingfei Ma et al.   Microbiome

The Epstein-Barr virus induces the expression of the LPAM-1 integrin in B-cells in vitro and in vivo

(2018) Susanne Delecluse et al.   JOURNAL OF VIROLOGY

Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome

(2018) Geoffrey D. Hannigan et al.   mBio

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation

(2018) L. A. Draper et al.   Microbiome

Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection

(2017) Stephan J. Ott et al.   GASTROENTEROLOGY

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

(2017) Guoyan Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inflammation boosts bacteriophage transfer between Salmonella spp.

(2017) Médéric Diard et al.   SCIENCE

The Human Gut Phage Community and Its Implications for Health and Disease

(2017) Pilar Manrique et al.   Viruses-Basel

Spatial disturbances in altered mucosal and luminal gut viromes of diet-induced obese mice

(2016) Min-Soo Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Enteric Viruses Ameliorate Gut Inflammation via Toll-like Receptor 3 and Toll-like Receptor 7-Mediated Interferon-β Production

(2016) Jin-Young Yang et al.   IMMUNITY

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses

(2016) François Enault et al.   ISME Journal

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

(2016) John R. Kelly et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Modulation of Oxidative Stress: Pharmaceutical and Pharmacological Aspects

(2016) Liudmila Korkina et al.   Oxidative Medicine and Cellular Longevity

Bacteriophage infections of microbiota can lead to leaky gut in an experimental rodent model

(2016) George Tetz et al.   Gut Pathogens

Hyperexpansion of RNA Bacteriophage Diversity

(2016) Siddharth R. Krishnamurthy et al.   PLOS BIOLOGY

Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli

(2015) Marta Veses-Garcia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Metabolism Links Bacterial Biofilms and Colon Carcinogenesis

(2015) Caroline H. Johnson et al.   Cell Metabolism

Cell Walls and the Convergent Evolution of the Viral Envelope

(2015) Jan P. Buchmann et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Transfer of antibiotic-resistance genes via phage-related mobile elements

(2015) Maryury Brown-Jaque et al.   PLASMID

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters

(2015) Jeremy J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

(2015) Alejandro Reyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human gut virome: a multifaceted majority

(2015) Lesley A. Ogilvie et al.   Frontiers in Microbiology

Norovirus Triggered Microbiota-driven Mucosal Inflammation in Interleukin 10-deficient Mice

(2014) Marijana Basic et al.   INFLAMMATORY BOWEL DISEASES

Persistent gut microbiota immaturity in malnourished Bangladeshi children

(2014) Sathish Subramanian et al.   NATURE

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

(2013) Sheetal R. Modi et al.   NATURE

Rapid evolution of the human gut virome

(2013) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophage adhering to mucus provide a non-host-derived immunity

(2013) J. J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hurdles in bacteriophage therapy: Deconstructing the parameters

(2013) Jessica Tsonos et al.   VETERINARY MICROBIOLOGY

Phage  C2 Mediates Transduction of Tn6215, Encoding Erythromycin Resistance, between Clostridium difficile Strains

(2013) S. Goh et al.   mBio

Type 1 Diabetes Is Associated With Enterovirus Infection in Gut Mucosa

(2012) M. Oikarinen et al.   DIABETES

Efficient transfer of antibiotic resistance plasmids by transduction within methicillin-resistant Staphylococcus aureus USA300 clone

(2012) Marian Varga et al.   FEMS MICROBIOLOGY LETTERS

Nearly Constant Shedding of Diverse Enteric Viruses by Two Healthy Infants

(2012) B. Kapusinszky et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High Temperature in Combination with UV Irradiation Enhances Horizontal Transfer of stx2 Gene from E. coli O157:H7 to Non-Pathogenic E. coli

(2012) Wan-Fu Yue et al.   PLoS One

Modulation of immune homeostasis by commensal bacteria

(2011) Ivaylo I Ivanov et al.   CURRENT OPINION IN MICROBIOLOGY

Bacteriophage-mediated transduction of antibiotic resistance in enterococci

(2011) R. Mazaheri Nezhad Fard et al.   LETTERS IN APPLIED MICROBIOLOGY

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE