Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children

Environmental enteric dysfunction pathways and child stunting: A systematic review

(2018) Kaitlyn M. Harper et al.   PLoS Neglected Tropical Diseases

Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa

(2018) Pascale Vonaesch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of quantitative molecular diagnostic methods to investigate the effect of enteropathogen infections on linear growth in children in low-resource settings: longitudinal analysis of results from the MAL-ED cohort study

(2018) Elizabeth T Rogawski et al.   Lancet Global Health

Environmental enteric dysfunction and child stunting

(2018) Sophie Budge et al.   NUTRITION REVIEWS

Diet and the Microbiome

(2017) Nida Murtaza et al.   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

Influence of diet on the gut microbiome and implications for human health

(2017) Rasnik K. Singh et al.   Journal of Translational Medicine

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

(2017) Guoyan Zhao et al.   VIROLOGY

Human Gut-Derived Commensal Bacteria Suppress CNS Inflammatory and Demyelinating Disease

(2017) Ashutosh Mangalam et al.   Cell Reports

Antagonistic activities of some Bifidobacterium sp. strains isolated from resident infant gastrointestinal microbiota on Gram-negative enteric pathogens

(2016) Cristina Delcaru et al.   ANAEROBE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Longitudinal Analysis of the Intestinal Microbiota in Persistently Stunted Young Children in South India

(2016) Duy M. Dinh et al.   PLoS One

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

(2015) Alejandro Reyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota

(2015) Ethan K. Gough et al.   Microbiome

Multiple Micronutrient Supplementation Transiently Ameliorates Environmental Enteropathy in Malawian Children Aged 12–35 Months in a Randomized Controlled Clinical Trial

(2014) Hannah E Smith et al.   JOURNAL OF NUTRITION

Geographic variation in the eukaryotic virome of human diarrhea

(2014) Lori R. Holtz et al.   VIROLOGY

Bacteriophages in Gut Samples From Pediatric Crohn’s Disease Patients

(2013) Josef Wagner et al.   INFLAMMATORY BOWEL DISEASES

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Abnormal Gut Integrity Is Associated With Reduced Linear Growth in Rural Malawian Children

(2012) Ariana J. Weisz et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Reduced birthweight in short or primiparous mothers: physiological or pathological?

(2010) X Zhang et al.   BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Maternal and child undernutrition: global and regional exposures and health consequences

(2008) Robert E Black et al.   LANCET

Systematic review of the efficacy and effectiveness of complementary feeding interventions in developing countries

(2008) Kathryn G. Dewey et al.   Maternal and Child Nutrition