Emerging Roles of Gut Virome in Pediatric Diseases

Fecal and mucosal microbiota profiling in pediatric inflammatory bowel diseases

(2021) Lorenza Putignani et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner

(2020) Mohammadali Khan Mirzaei et al.   Cell Host & Microbe

The microbiome and inflammatory bowel disease

(2020) Kerri L. Glassner et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

The dynamics of the stool virome in very early onset inflammatory bowel disease

(2020) Guanxiang Liang et al.   Journal of Crohns & Colitis

The stepwise assembly of the neonatal virome is modulated by breastfeeding

(2020) Guanxiang Liang et al.   NATURE

The human milk microbiome: who, what, when, where, why, and how?

(2020) Lisa F Stinson et al.   NUTRITION REVIEWS

Beyond Just Bacteria: Functional Biomes in the Gut Ecosystem Including Virome, Mycobiome, Archaeome and Helminths

(2020) Ravichandra Vemuri et al.   Microorganisms

Gut microbiota modulation: a novel strategy for prevention and treatment of colorectal cancer

(2020) Winnie Fong et al.   ONCOGENE

Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children

(2020) Chandni Desai et al.   PLoS Neglected Tropical Diseases

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

(2020) Ann C. Gregory et al.   Cell Host & Microbe

Cross-Domain and Viral Interactions in the Microbiome

(2019) Aislinn D. Rowan-Nash et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses

(2019) Claude Kwe Yinda et al.   mSphere

Choice of assembly software has a critical impact on virome characterisation

(2019) Thomas D. S. Sutton et al.   Microbiome

Enterovirus as trigger of coeliac disease: nested case-control study within prospective birth cohort

(2019) Christian R Kahrs et al.   BMJ-British Medical Journal

Higher abundance of enterovirus A species in the gut of children with islet autoimmunity

(2019) Ki Wook Kim et al.   Scientific Reports

Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

(2019) J. Leonardo Moreno-Gallego et al.   Cell Host & Microbe

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

(2019) Andrew Maltez Thomas et al.   NATURE MEDICINE

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

(2019) Jakob Wirbel et al.   NATURE MEDICINE

Functional analysis of gut microbiota and immunoinflammation in children with autism spectrum disorders

(2019) Claudia Carissimi et al.   DIGESTIVE AND LIVER DISEASE

Giant oversights in the human gut virome

(2019) Thomas D S Sutton et al.   GUT

Type 1 Diabetes: an Association Between Autoimmunity, the Dynamics of Gut Amyloid-producing E. coli and Their Phages

(2019) George Tetz et al.   Scientific Reports

Norovirus encounters in the gut: multifaceted interactions and disease outcomes

(2019) Ebrahim Hassan et al.   Mucosal Immunology

Translating the gut microbiome: ready for the clinic?

(2019) Susan V. Lynch et al.   Nature Reviews Gastroenterology & Hepatology

Studying the gut virome in the metagenomic era: challenges and perspectives

(2019) Sanzhima Garmaeva et al.   BMC BIOLOGY

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Metagenomics of the faecal virome indicate a cumulative effect of enterovirus and gluten amount on the risk of coeliac disease autoimmunity in genetically at risk children: the TEDDY study

(2019) Katri Lindfors et al.   GUT

Norovirus Changes Susceptibility to Type 1 Diabetes by Altering Intestinal Microbiota and Immune Cell Functions

(2019) James A. Pearson et al.   Frontiers in Immunology

Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

(2019) Adam G. Clooney et al.   Cell Host & Microbe

Prospective virome analyses in young children at increased genetic risk for type 1 diabetes

(2019) Kendra Vehik et al.   NATURE MEDICINE

Higher frequency of vertebrate‐infecting viruses in the gut of infants born to mothers with type 1 diabetes

(2019) Ki Wook Kim et al.   PEDIATRIC DIABETES

First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil

(2019) Ulisses Alves Rosa et al.   Scientific Reports

Discordant transmission of bacteria and viruses from mothers to babies at birth

(2019) Rabia Maqsood et al.   Microbiome

Early-life gut microbiome and egg allergy

(2018) M. Fazlollahi et al.   ALLERGY

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

(2018) Pamela Ferretti et al.   Cell Host & Microbe

Genetics of type 1 diabetes

(2018) Catherine C .Robertson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Shared and Distinct Features of Human Milk and Infant Stool Viromes

(2018) Pia S. Pannaraj et al.   Frontiers in Microbiology

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity

(2018) Angela McCann et al.   PeerJ

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Celiac Disease Autoimmunity

(2018) Miguel Ángel López Casado et al.   ARCHIVUM IMMUNOLOGIAE ET THERAPIAE EXPERIMENTALIS

Enteric Virome and Bacterial Microbiota in Children with Ulcerative Colitis and Crohnʼs Disease

(2018) Melissa A. Fernandes et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Estimates of the global, regional, and national morbidity, mortality, and aetiologies of diarrhoea in 195 countries: a systematic analysis for the Global Burden of Disease Study 2016

(2018) Christopher Troeger et al.   LANCET INFECTIOUS DISEASES

Early-Onset Inflammatory Bowel Disease

(2018) Judith R. Kelsen et al.   IMMUNOLOGY AND ALLERGY CLINICS OF NORTH AMERICA

Global, regional, and national age-sex specific mortality for 264 causes of death, 1980–2016: a systematic analysis for the Global Burden of Disease Study 2016

(2017) Mohsen Naghavi et al.   LANCET

Examining the gut bacteriome, virome, and mycobiome in glucose metabolism disorders: Are we on the right track?

(2017) Charikleia Stefanaki et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Gut microbiota and IBD: causation or correlation?

(2017) Josephine Ni et al.   Nature Reviews Gastroenterology & Hepatology

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

(2017) Guoyan Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reovirus infection triggers inflammatory responses to dietary antigens and development of celiac disease

(2017) Romain Bouziat et al.   SCIENCE

Viral communities of the human gut: metagenomic analysis of composition and dynamics

(2017) Varun Aggarwala et al.   Mobile DNA

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

(2017) Sabrina Duranti et al.   Microbiome

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

(2016) Tung Gia Phan et al.   ARCHIVES OF VIROLOGY

Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk

(2016) Weifei Zhu et al.   CELL

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

(2016) Floris Imhann et al.   GUT

Multiplex RT-PCR for rapid detection of viruses commonly causing diarrhea in pediatric patients

(2016) Aksara Thongprachum et al.   JOURNAL OF MEDICAL VIROLOGY

Viral infections in type 1 diabetes mellitus — why the β cells?

(2016) Anne Op de Beeck et al.   Nature Reviews Endocrinology

Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children

(2016) L. V. Blanton et al.   SCIENCE

Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition

(2016) M. Schwarzer et al.   SCIENCE

Cosavirus, Salivirus and Bufavirus in Diarrheal Tunisian Infants

(2016) Siwar Ayouni et al.   PLoS One

Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

(2016) Matthieu Million et al.   Scientific Reports

Bufavirus in fecal specimens of patients with and without diarrhea in Thailand

(2015) Thaweesak Chieochansin et al.   ARCHIVES OF VIROLOGY

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

The role of the gut microbiome in the healthy adult status

(2015) Valeria D’Argenio et al.   CLINICA CHIMICA ACTA

Bufavirus genotype 3 in Turkish children with severe diarrhoea

(2015) A. Altay et al.   CLINICAL MICROBIOLOGY AND INFECTION

Gut Virome Sequencing in Children With Early Islet Autoimmunity: Figure 1

(2015) Lenka Kramná et al.   DIABETES CARE

Enhanced virome sequencing using targeted sequence capture

(2015) Todd N. Wylie et al.   GENOME RESEARCH

Metagenomic Analysis of Microbiome in Colon Tissue from Subjects with Inflammatory Bowel Diseases Reveals Interplay of Viruses and Bacteria

(2015) Weiwei Wang et al.   INFLAMMATORY BOWEL DISEASES

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

(2015) Alejandro Reyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Infectious asthma triggers: time to revise the hygiene hypothesis?

(2015) Wilmore C. Webley et al.   TRENDS IN MICROBIOLOGY

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis

(2015) Thomas Briese et al.   mBio

Detection of a Low-Grade Enteroviral Infection in the Islets of Langerhans of Living Patients Newly Diagnosed With Type 1 Diabetes

(2014) Lars Krogvold et al.   DIABETES

Pediatric parechovirus infections

(2014) Susanna Esposito et al.   JOURNAL OF CLINICAL VIROLOGY

A subset of anti-rotavirus antibodies directed against the viral protein VP7 predicts the onset of celiac disease and induces typical features of the disease in the intestinal epithelial cell line T84

(2013) Marzia Dolcino et al.   IMMUNOLOGIC RESEARCH

Seroconversion to Multiple Islet Autoantibodies and Risk of Progression to Diabetes in Children

(2013) Anette G. Ziegler et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

Nearly Constant Shedding of Diverse Enteric Viruses by Two Healthy Infants

(2012) B. Kapusinszky et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Acute Diarrhea in West African Children: Diverse Enteric Viruses and a Novel Parvovirus Genus

(2012) T. G. Phan et al.   JOURNAL OF VIROLOGY

Going viral: next-generation sequencing applied to phage populations in the human gut

(2012) Alejandro Reyes et al.   NATURE REVIEWS MICROBIOLOGY

Rotaviruses: From Pathogenesis to Vaccination

(2009) Harry B. Greenberg et al.   GASTROENTEROLOGY

Viral diversity and dynamics in an infant gut

(2008) Mya Breitbart et al.   RESEARCH IN MICROBIOLOGY