Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing
Authors
Keywords
-
Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-06-10
DOI
10.1038/s41467-022-30963-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Screening Linear and Circular RNA Transcripts from Stress Granules
- (2022) Shuai Chen et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes
- (2021) Ruli Gao et al. NATURE BIOTECHNOLOGY
- isoCirc catalogs full-length circular RNA isoforms in human transcriptomes
- (2021) Ruijiao Xin et al. Nature Communications
- Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long
- (2021) Jinyang Zhang et al. NATURE BIOTECHNOLOGY
- Circular RNA-encoded oncogenic E-cadherin variant promotes glioblastoma tumorigenicity through activation of EGFR–STAT3 signalling
- (2021) Xinya Gao et al. NATURE CELL BIOLOGY
- Reconstruction of circular RNAs using Illumina and Nanopore RNA-seq datasets
- (2021) Jinyang Zhang et al. METHODS
- CSCD2: an integrated interactional database of cancer-specific circular RNAs
- (2021) Jing Feng et al. NUCLEIC ACIDS RESEARCH
- Characterizing Circular RNAs Using Nanopore Sequencing
- (2021) Jinyang Zhang et al. TRENDS IN BIOCHEMICAL SCIENCES
- Mammalian circular RNAs result largely from splicing errors
- (2021) Chuan Xu et al. Cell Reports
- A single–cell type transcriptomics map of human tissues
- (2021) Max Karlsson et al. Science Advances
- Visualization of circular RNAs and their internal splicing events from transcriptomic data
- (2020) Yi Zheng et al. BIOINFORMATICS
- Transcriptional diversity and bioenergetic shift in human breast cancer metastasis revealed by single-cell RNA sequencing
- (2020) Ryan T. Davis et al. NATURE CELL BIOLOGY
- Circular RNA circRNF20 promotes breast cancer tumorigenesis and Warburg effect through miR-487a/HIF-1α/HK2
- (2020) Lili Cao et al. Cell Death & Disease
- Accurate quantification of circular RNAs identifies extensive circular isoform switching events
- (2020) Jinyang Zhang et al. Nature Communications
- TIMER2.0 for analysis of tumor-infiltrating immune cells
- (2020) Taiwen Li et al. NUCLEIC ACIDS RESEARCH
- The changing mouse embryo transcriptome at whole tissue and single-cell resolution
- (2020) Peng He et al. NATURE
- Targeting Mitochondria-Located circRNA SCAR Alleviates NASH via Reducing mROS Output
- (2020) Qiyi Zhao et al. CELL
- An inducible circular RNA circKcnt2 inhibits ILC3 activation to facilitate colitis resolution
- (2020) Benyu Liu et al. Nature Communications
- Spatial expression analyses of the putative oncogene ciRS-7 in cancer reshape the microRNA sponge theory
- (2020) Lasse S. Kristensen et al. Nature Communications
- Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
- (2019) Dvir Aran et al. NATURE IMMUNOLOGY
- Reconstruction of full-length circular RNAs enables isoform-level quantification
- (2019) Yi Zheng et al. Genome Medicine
- Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals
- (2019) Peifeng Ji et al. Cell Reports
- The circular RNome of primary breast cancer
- (2019) Marcel Smid et al. GENOME RESEARCH
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity
- (2019) Chu-Xiao Liu et al. CELL
- Determining cell type abundance and expression from bulk tissues with digital cytometry
- (2019) Aaron M. Newman et al. NATURE BIOTECHNOLOGY
- Circbank: a comprehensive database for circRNA with standard nomenclature
- (2019) Ming Liu et al. RNA Biology
- Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
- (2019) Francesca Finotello et al. Genome Medicine
- SMARTer single cell total RNA sequencing
- (2019) Karen Verboom et al. NUCLEIC ACIDS RESEARCH
- Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines
- (2019) Hang Ruan et al. Genome Medicine
- Comprehensive circular RNA profiling identifies CircFAM120A as a new biomarker of hypoxic lung adenocarcinoma
- (2019) Xinghua Cheng et al. Annals of Translational Medicine
- The Circular RNome of Developmental Retina in Mice
- (2019) Xue-Jiao Chen et al. Molecular Therapy-Nucleic Acids
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Computational Strategies for Exploring Circular RNAs
- (2018) Yuan Gao et al. TRENDS IN GENETICS
- Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs
- (2018) Tetsutaro Hayashi et al. Nature Communications
- Epithelial-mesenchymal transition (EMT) signature is inversely associated with T-cell infiltration in non-small cell lung cancer (NSCLC)
- (2018) Young Kwang Chae et al. Scientific Reports
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq
- (2018) Mihriban Karaayvaz et al. Nature Communications
- CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison
- (2018) Rui Dong et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Circlular RNA BARD1 (Hsa_circ_0001098) overexpression in breast cancer cells with TCDD treatment could promote cell apoptosis via miR-3942/BARD1 axis
- (2018) Jianzhu Zhao et al. CELL CYCLE
- Comprehensive analysis of circRNA expression profiles in humans by RAISE
- (2017) Lin Li et al. INTERNATIONAL JOURNAL OF ONCOLOGY
- Effective detection of variation in single-cell transcriptomes using MATQ-seq
- (2017) Kuanwei Sheng et al. NATURE METHODS
- Reversed graph embedding resolves complex single-cell trajectories
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Microbiota promotes systemic T-cell survival through suppression of an apoptotic factor
- (2017) Raymond Soto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer
- (2017) Woosung Chung et al. Nature Communications
- Heterogeneous circRNA expression profiles and regulatory functions among HEK293T single cells
- (2017) Chaofang Zhong et al. Scientific Reports
- Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer
- (2017) Trine Line Hauge Okholm et al. npj Genomic Medicine
- Detecting circular RNAs: bioinformatic and experimental challenges
- (2016) Linda Szabo et al. NATURE REVIEWS GENETICS
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs
- (2016) Qiupeng Zheng et al. Nature Communications
- Comprehensive identification of internal structure and alternative splicing events in circular RNAs
- (2016) Yuan Gao et al. Nature Communications
- circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations
- (2016) Xiaoping Chen et al. Scientific Reports
- The RNA Binding Protein Quaking Regulates Formation of circRNAs
- (2015) Simon J. Conn et al. CELL
- Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
- (2015) Agnieszka Rybak-Wolf et al. MOLECULAR CELL
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Robust enumeration of cell subsets from tissue expression profiles
- (2015) Aaron M Newman et al. NATURE METHODS
- Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos
- (2015) Xiaoying Fan et al. GENOME BIOLOGY
- CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
- (2015) Yuan Gao et al. GENOME BIOLOGY
- The circular RNA Cdr1as, via miR-7 and its targets, regulates insulin transcription and secretion in islet cells
- (2015) Huanyu Xu et al. Scientific Reports
- Circular RNA Is Expressed across the Eukaryotic Tree of Life
- (2014) Peter L. Wang et al. PLoS One
- circBase: a database for circular RNAs
- (2014) Petar Glažar et al. RNA
- Smart-seq2 for sensitive full-length transcriptome profiling in single cells
- (2013) Simone Picelli et al. NATURE METHODS
- Cell-Type Specific Features of Circular RNA Expression
- (2013) Julia Salzman et al. PLoS Genetics
- Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
- (2012) Daniel Ramsköld et al. NATURE BIOTECHNOLOGY
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search